API update

PyEED · Jun 11, 2024 · da26632 · da26632
1 parent 3f48fd3
commit da26632
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diff --git a/pyeed/core/abstractannotation.py b/pyeed/core/abstractannotation.py
@@ -47,6 +47,11 @@ class AbstractAnnotation(
         json_schema_extra=dict(),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/alignmentresult.py b/pyeed/core/alignmentresult.py
@@ -59,6 +59,11 @@ class AlignmentResult(
         json_schema_extra=dict(),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/blastdata.py b/pyeed/core/blastdata.py
@@ -88,6 +88,11 @@ class BlastData(
         json_schema_extra=dict(),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/clustalomegaresult.py b/pyeed/core/clustalomegaresult.py
@@ -30,6 +30,11 @@ class ClustalOmegaResult(
         json_schema_extra=dict(),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/dnarecord.py b/pyeed/core/dnarecord.py
@@ -30,6 +30,11 @@ class DNARecord(
         json_schema_extra=dict(),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/numberedsequence.py b/pyeed/core/numberedsequence.py
@@ -38,6 +38,11 @@ class NumberedSequence(
         ),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/organism.py b/pyeed/core/organism.py
@@ -106,6 +106,11 @@ class Organism(
         ),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/pairwisealignmentresult.py b/pyeed/core/pairwisealignmentresult.py
@@ -58,6 +58,11 @@ class PairwiseAlignmentResult(
         json_schema_extra=dict(),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/proteinrecord.py b/pyeed/core/proteinrecord.py
@@ -73,6 +73,11 @@ class ProteinRecord(
         ),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/region.py b/pyeed/core/region.py
@@ -41,6 +41,11 @@ class Region(
         ),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/regionset.py b/pyeed/core/regionset.py
@@ -33,6 +33,11 @@ class RegionSet(
         ),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _object_terms: Set[str] = PrivateAttr(
         default={"http://semanticscience.org/resource/SIO_000370"}
     )

diff --git a/pyeed/core/sequence.py b/pyeed/core/sequence.py
@@ -36,6 +36,11 @@ class Sequence(
         json_schema_extra=dict(),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/sequencerecord.py b/pyeed/core/sequencerecord.py
@@ -101,6 +101,11 @@ class SequenceRecord(
         ),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/site.py b/pyeed/core/site.py
@@ -33,6 +33,11 @@ class Site(
         ),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")

diff --git a/pyeed/core/standardnumbering.py b/pyeed/core/standardnumbering.py
@@ -40,6 +40,11 @@ class StandardNumbering(
         ),
     )
 
+    _repo: Optional[str] = PrivateAttr(default="https://github.com/PyEED/pyeed")
+    _commit: Optional[str] = PrivateAttr(
+        default="3f48fd300e8d9af8dc391aa672f618d314088bdc"
+    )
+
     _raw_xml_data: Dict = PrivateAttr(default_factory=dict)
 
     @model_validator(mode="after")