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<!DOCTYPE html>
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the DICOM standard for quantitative imaging research applications.">
<meta name="author" content="Andrey Fedorov, QIICR">
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<meta property="og:description" content="Hands-on tutorial at the MICCAI 2018 focusing on the aspects of using
the DICOM standard for quantitative imaging research applications.">
<title>DICOM tutorial at MICCAI 2018</title>
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<a class="navbar-brand page-scroll" href="#page-top">DICOM for MICCAI 2018</a>
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<div class="intro-lead-in">21st Century DICOM for Quantitative Imaging Research</div>
<div class="intro-heading"> Why, What, and How</div>
<a href="#about" class="page-scroll btn btn-xl">Tell Me More</a>
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<h2 class="section-heading">About</h2>
<p class="larger thick">When: PM, Sunday, September 16, 2018</p>
<p class="larger thick">Where: <a href="http://www.miccai2018.org/">MICCAI 2018</a> @ <a href="http://www.lovegranada.com/">Granada, Spain</a>, <a href="https://goo.gl/maps/U1nYpFGJrCB2">Saray Hotel</a>, Mocarabes Salon 6</p>
<p class="larger text-muted">The objective of this tutorial is to introduce the <a href="http://miccai.org/">MICCAI</a> community to the new kinds of DICOM objects and capabilities that can be used for storage and communication of the data typically produced in the process of quantitative image analysis (such as image segmentation results, measurements, radiomics features, parametric maps).</p>
<p class="larger text-muted">Over the course of presentations and hands-on sessions, we explain how DICOM can, and we believe should, be used for storing your processing results such as segmentations, parametric maps and volumetric measurements. </p>
<p class="larger text-muted">After completing this tutorial, attendees are expected to develop an understanding of the relevant new and long-established capabilities of the DICOM standard, as well as some of the tools that they can use to experiment with adoption of the standard in their everyday research.</p>
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<li>
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<img class="img-circle img-responsive" src="img/about/takeoff.jpg" alt="">
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<h4>3:00 PM</h4>
<h4 class="subheading">Introduction, goals, scope</h4>
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<div class="timeline-body">
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<h4>3:10 PM</h4>
<h4 class="subheading">DICOM: Overview and historical perspective - David Clunie</h4>
</div>
<div class="timeline-body">
<p class="text-muted">This talk will introduce the main concepts of the DICOM standard, the role it plays in the modern healthcare enterprise, its overall purpose and capabilities.</p>
<!--<p class="text-muted">Slides - <a href="">PDF</a></p>-->
</div>
</div>
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<div class="timeline-image">
<img class="img-circle img-responsive" src="img/team/fedorov.jpeg" alt="">
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<div class="timeline-heading">
<h4>3:40 PM</h4>
<h4 class="subheading">DICOM for Quantitative Imaging - Andrey Fedorov</h4>
</div>
<div class="timeline-body">
<p class="text-muted">This talk will discuss the relevance of the DICOM standard in quantitative imaging research, motivate its use and discuss specific capabilities as applied to the storage of common image analysis outputs, such as image segmentation results, parametric maps and region-based quantitative measurements.</p>
<!--<p class="text-muted">Slides - <a href="">PDF</a></p>-->
</div>
</div>
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<img class="img-circle img-responsive" src="img/team/nolden.png" alt="">
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<div class="timeline-heading">
<h4>16:05 PM</h4>
<h4 class="subheading">DICOM Data Management Systems - Marco Nolden</h4>
</div>
<div class="timeline-body">
<p class="text-muted">An overview, capabilities and summary of experience with the various data management platforms that can work with the DICOM data for medical image computing applications. Some of the tools we plan to cover will include XNAT and dcm4chee.</p>
<!--<p class="text-muted">Slides - <a href="">PDF</a></p>-->
</div>
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<h4>4:30 PM</h4>
<h4 class="subheading">Break</h4>
</div>
<div class="timeline-body">
<p class="text-muted"></p>
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<div class="timeline-heading">
<h4>5:00 PM</h4>
<h4 class="subheading">Hands-on tutorial prerequisites setup</h4>
</div>
<div class="timeline-body">
<p class="text-muted">Attendees will be guided over the steps of installing the free open source software tools that will be used in the tutorial, and which can help the attendees work with the DICOM data in their everyday work after the conference. The tools utilized in the tutorial will include <a href="http://slicer.org">3D Slicer</a>, <a href="http://mitk.org">MITK</a>, <a href="http://dcmtk.org">DCMTK</a>, <a href="https://atom.io">Atom</a>, and <a href="https://github.com/qiicr/dcmqi">dcmqi</a>. We will also distribute the sample dataset that will be used in the tutorial.</p>
<!--<p class="text-muted thick"><a href="">Follow this link</a>--> Closer to the event we will provide instructions on how to install the prerequisites for your platform in advance of the tutorial!</p>
</div>
</div>
</li>
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<div class="timeline-image">
<img class="img-circle img-responsive" src="img/schedule/hnc24.jpg" alt="">
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<div class="timeline-panel">
<div class="timeline-heading">
<h4>5:30 PM</h4>
<h4 class="subheading">Hands-on session: Using DICOM to store your analysis results</h4>
</div>
<div class="timeline-body">
<p class="text-muted">In this hands-on exercise attendees will use one or more open
source tools (3D Slicer, MITK, dcmqi) to load DICOM data, segment regions of interest, and extract radiomics features. The results will be stored using standard (no private attributes) DICOM objects. The resulting standard-compliant data storage will be contrasted with the alternative approaches used in the community.</p>
<!--<p class="text-muted thick"><a href="http://bit.ly/dicom4miccai-handson">Tutorial materials</a></p>-->
</div>
</div>
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<li class="timeline-inverted">
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<div class="timeline-heading">
<h4>6:15 PM</h4>
<h4 class="subheading">Hands-on session: DICOM data wrangling</h4>
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<p class="text-muted">In this session we will go over the steps of extracting various data attributes (both in the source images, and in the research results stored in DICOM representation) from the standard DICOM representations of the analysis results, generating summary visualizations and preparing representations (e.g., CSV spreadsheets) suitable for the analysis by non-DICOM-enabled tools.</p>
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