Apply Matthias' suggestions #2331
Workflow file for this run
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| name: CI | |
| on: [push] | |
| jobs: | |
| pre-commit-checks: | |
| name: Linux - pre-commit checks - Python 3.10 | |
| timeout-minutes: 30 | |
| runs-on: ubuntu-latest | |
| env: | |
| PRE_COMMIT_USE_MICROMAMBA: 1 | |
| steps: | |
| - name: Checkout branch | |
| uses: actions/checkout@v3.5.2 | |
| - name: Set up micromamba | |
| uses: mamba-org/setup-micromamba@d05808540d968a55ca33c798e0661fb98f533c73 | |
| - name: Add micromamba to GITHUB_PATH | |
| run: echo "${HOME}/micromamba-bin" >> "$GITHUB_PATH" | |
| - name: Install Python 3.10 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Run pre-commit checks | |
| uses: pre-commit/action@v3.0.0 | |
| unit-tests: | |
| name: Tests - ${{ matrix.os }} - Py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CI: True | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| include: | |
| - { os: ubuntu-latest, python-version: '3.8' } | |
| - { os: ubuntu-latest, python-version: '3.9' } | |
| - { os: ubuntu-latest, python-version: '3.10' } | |
| - { os: ubuntu-latest, python-version: '3.11' } | |
| - { os: macos-latest, python-version: '3.10' } | |
| - { os: windows-latest, python-version: '3.10' } | |
| steps: | |
| - name: Checkout branch | |
| uses: actions/checkout@v3 | |
| - name: Set up conda env | |
| uses: mamba-org/setup-micromamba@875557da4ee020f18df03b8910a42203fbf02da1 | |
| with: | |
| environment-file: environment.yml | |
| init-shell: ${{ matrix.os == 'windows-latest' && 'powershell' || 'bash' }} | |
| cache-environment: true | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Install repository (unix) | |
| if: matrix.os != 'windows-latest' | |
| shell: bash -el {0} | |
| run: pip install --no-use-pep517 --no-deps --disable-pip-version-check -e . | |
| - name: Install repository (windows) | |
| if: matrix.os == 'windows-latest' | |
| shell: powershell | |
| run: pip install --no-use-pep517 --no-deps --disable-pip-version-check -e . | |
| - name: Run pytest (unix) | |
| if: matrix.os != 'windows-latest' | |
| shell: bash -el {0} | |
| run: pytest -nauto tests/glm --doctest-modules src/glum | |
| - name: Run pytest (windows) | |
| if: matrix.os == 'windows-latest' | |
| shell: powershell | |
| run: pytest -nauto .\tests\glm --doctest-modules .\src\glum | |
| - name: Run doctest | |
| if: matrix.os != 'windows-latest' | |
| shell: bash -el {0} | |
| # Check that the readme example will work by running via doctest. | |
| # We run outside the repo to make the test a bit more similar to | |
| # a user running after installing with conda. | |
| run: | | |
| mkdir ../temp | |
| cp README.md ../temp | |
| cd ../temp | |
| python -m doctest -v README.md |