CHANGELOG.md

Changelog

0.5.1 (2022-11-24)

Bug Fixes

• change the seq_id in the output gff to match the input samplename (37b7d9e)

0.5.0 (2022-04-22)

⚠ BREAKING CHANGES

• Use output files in stead of folders

Features

• Use output files in stead of folders (b0dfef8)

Documentation

• Update docs for file output in stead of folders (7c47393)

0.4.0 (2022-04-14)

⚠ BREAKING CHANGES

• Use only a single minimum coverage level

Features

• Use only a single minimum coverage level (cdd29b7)

Bug Fixes

• Fix WriteOutputs number of args (8bf72f8)

Performance Improvements

• Use pysam directly in stead of pysamstats (afd8c0a)

Dependencies

• remove parmap as a dependency (0aaed4d)

Documentation

• add docstring to TrueConsense.Outputs (4855ee9)
• add docstrings to functions in TrueConsense.Ambig (4e8a138)
• add docstrings to functions in TrueConsense.Coverage (47d8c89)
• add docstrings to functions in TrueConsense.Events (6d754e3)
• add docstrings to functions in TrueConsense.indexing (650a5d1)
• add docstrings to functions in TrueConsense.Sequences (5abdb81)
• add docstrings to functions of TrueConsense.ORFs (b52a750)
• update readme and docs-index to support a single coverage level (f9fd73e)
• update TrueConsense docs to only feature a single coverage level (53cecc3)

0.3.0 (2021-11-25)

Features

• add arg to override index with pre-made index on certain positions (9b3227c)

Documentation

• add changelog page (2f29130)
• add explanation of --index-override flag to docs (ac4ac4b)