diff --git a/activities/demo/demo_schema b/activities/demo/demo_schema index 0d17347..e7693d2 100644 --- a/activities/demo/demo_schema +++ b/activities/demo/demo_schema @@ -14,6 +14,10 @@ "version": "0.0.1", "ui": { "addProperties": [ + { + "isAbout": "demo:src_subject_id", + "variableName": "src_subject_id" + }, { "isAbout": "demo:interview_age", "variableName": "interview_age" @@ -24,6 +28,7 @@ } ], "order": [ + "demo:src_subject_id", "demo:interview_age", "demo:sex" ], diff --git a/nda_cde/cde_dsm5crossad01_definitions.csv b/nda_cde/cde_dsm5crossad01_definitions.csv deleted file mode 100644 index 673c6e9..0000000 --- a/nda_cde/cde_dsm5crossad01_definitions.csv +++ /dev/null @@ -1,31 +0,0 @@ -"ElementName","DataType","Size","Required","ElementDescription","ValueRange","Notes","Aliases" -"subjectkey","GUID","","Required","The NDAR Global Unique Identifier (GUID) for research subject","NDAR*","","guid" -"src_subject_id","String","20","Required","Subject ID how it's defined in lab/project","","","" -"interview_age","Integer","","Required","Age in months at the time of the interview/test/sampling/imaging.","0::1440","Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.","" -"interview_date","Date","","Required","Date on which the interview/genetic test/sampling/imaging/biospecimen was completed. MM/DD/YYYY","","","" -"sex","String","20","Required","Sex of subject at birth","M;F; O; NR","M = Male; F = Female; O=Other; NR = Not reported","" -"dsm5crossad_1","Integer","","Required","During the past two weeks, how often have you been bothered by having little interest or pleasure in doing things?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_2","Integer","","Required","During the past two weeks, how often have you been bothered by feeling down, depressed, or hopeless?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_3","Integer","","Required","During the past two weeks, how often have you been bothered by feeling more irritated, grouchy, or angry than usual?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_4","Integer","","Required","During the past two weeks, how often have you been bothered by sleeping less than usual, but still have lots of energy?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_5","Integer","","Required","During the past two weeks, how often have you been bothered by starting lots more projects than usual or doing more risky things than usual?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_6","Integer","","Required","During the past two weeks, how often have you been bothered by feeling nervous, anxious, frightened, worried, or on edge?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_7","Integer","","Required","During the past two weeks, how often have you been bothered by feeling panic or being frightened?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_8","Integer","","Required","During the past two weeks, how often have you been bothered by avoiding situations that make you anxious?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_9","Integer","","Required","During the past two weeks, how often have you been bothered by unexplained aches and pains (e.g. head, back, joints, abdomen, legs)?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_10","Integer","","Required","During the past two weeks, how often have you been bothered by feeling that your illnesses are not being taken seriously enough?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_11","Integer","","Required","During the past two weeks, how often have you been bothered by thoughts of actually hurting yourself?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_12","Integer","","Required","During the past two weeks, how often have you been bothered by hearing things other people couldn't hear, such as voices even when no one was around?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_13","Integer","","Required","During the past two weeks, how often have you been bothered by feeling that someone could hear your thoughts, or that you could hear what another person was thinking?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_14","Integer","","Required","During the past two weeks, how often have you been bothered by problems with sleep that affected your sleep quality over all?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_15","Integer","","Required","During the past two weeks, how often have you been bothered by problems with memory (e.g., learning new information) or with location (e.g., finding your way home)?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_16","Integer","","Required","During the past two weeks, how often have you been bothered by unpleasant thoughts, urges, or images that repeatedly enter your mind?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_17","Integer","","Required","During the past two weeks, how often have you been bothered by feeling driven to perform certain behaviors or mental acts over and over again?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_18","Integer","","Required","During the past two weeks, how often have you been bothered by feeling detached or distant from yourself, your body, your physical surroundings, or your memories?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_19","Integer","","Required","During the past two weeks, how often have you been bothered by not knowing who you really are or what you want out of life?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_20","Integer","","Required","During the past two weeks, how often have you been bothered by not feeling close to other people or enjoying your relationships with them?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_21","Integer","","Required","During the past two weeks, how often have you been bothered by drinking at least 4 drinks of any kind of alcohol in a single day?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_22","Integer","","Required","During the past two weeks, how often have you been bothered by smoking any cigarettes, a cigar, or pipe or using snuff or chewing tobacco?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_23","Integer","","Required","During the past two weeks, how often have you been bothered by using any of the following medicines ON YOUR OWN, that is, without a doctor's prescription, in greater amounts or longer than prescribed [e.g., painkillers (like Vicodin), stimulants (like Ritalin or Adderall), sedatives or tranquilizers (like sleeping pills or Valium), or drugs like marijuana, cocaine or crack, club drugs (like ecstasy), hallucinogens (like LSD), heroin, inhalants or solvents (like glue), or methamphetamine (like speed)]?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm5crossad_24","Integer","","Required","In what language did you collect the data?","1::24","1 = English; 2 = Chinese-Classical; 3 = Chinese-Simplified; 4 = Croatian; 5 = Czech; 6 = Dutch; 7 = Farsi; 8 = Finnish; 9 = French; 10 = German; 11 = Haitian Creole; 12 = Italian; 13 = Japanese; 14 = Korean; 15 = Polish; 16 = Portuguese; 17 = Romanian; 18 = Serbian; 19 = Spanish; 20 = Turkish; 21 = Swahili; 22 = Kirundi; 23 = Chichewa; 24 = Luganda ","" -"study","String","100","Recommended","Study; The code for each individual study","","","" diff --git a/nda_cde/cde_dsm5crossad01_template.csv b/nda_cde/cde_dsm5crossad01_template.csv deleted file mode 100644 index 6200c6d..0000000 --- a/nda_cde/cde_dsm5crossad01_template.csv +++ /dev/null @@ -1,2 +0,0 @@ -"cde_dsm5crossad","01" -"subjectkey","src_subject_id","interview_age","interview_date","sex","dsm5crossad_1","dsm5crossad_2","dsm5crossad_3","dsm5crossad_4","dsm5crossad_5","dsm5crossad_6","dsm5crossad_7","dsm5crossad_8","dsm5crossad_9","dsm5crossad_10","dsm5crossad_11","dsm5crossad_12","dsm5crossad_13","dsm5crossad_14","dsm5crossad_15","dsm5crossad_16","dsm5crossad_17","dsm5crossad_18","dsm5crossad_19","dsm5crossad_20","dsm5crossad_21","dsm5crossad_22","dsm5crossad_23","dsm5crossad_24","study" diff --git a/nda_cde/cde_dsm5crosspg01_definitions.csv b/nda_cde/cde_dsm5crosspg01_definitions.csv deleted file mode 100644 index 061e826..0000000 --- a/nda_cde/cde_dsm5crosspg01_definitions.csv +++ /dev/null @@ -1,32 +0,0 @@ -"ElementName","DataType","Size","Required","ElementDescription","ValueRange","Notes","Aliases" -"subjectkey","GUID","","Required","The NDAR Global Unique Identifier (GUID) for research subject","NDAR*","","guid" -"src_subject_id","String","20","Required","Subject ID how it's defined in lab/project","","","" -"interview_age","Integer","","Required","Age in months at the time of the interview/test/sampling/imaging.","0::1440","Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.","" -"interview_date","Date","","Required","Date on which the interview/genetic test/sampling/imaging/biospecimen was completed. MM/DD/YYYY","","","" -"sex","String","20","Required","Sex of subject at birth","M;F; O; NR","M = Male; F = Female; O=Other; NR = Not reported","" -"dsm_cross_pg1","Integer","","Required","During the past two weeks, how often has your child complained of stomachaches, headaches, or other aches and pains?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg2","Integer","","Required","During the past two weeks, how often has your child said he/she was worried about his/her health or about getting sick?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg3","Integer","","Required","During the past two weeks, how often has your child had troubles sleeping - that is, trouble falling asleep, staying asleep, or by waking up too early?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg4","Integer","","Required","During the past two weeks, how often has your child had problems paying attention when he/she was in class or doing his/her homework or reading a book or playing a game?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg5","Integer","","Required","During the past two weeks, how often has your child had less fun doing things than he/she used to?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg6","Integer","","Required","During the past two weeks, how often has your child felt sad or depressed for several hours?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg7","Integer","","Required","During the past two weeks, how often has your child felt more irritated or easily annoyed than usual?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg8","Integer","","Required","During the past two weeks, how often has your child felt angry or lost his/her temper?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg9","Integer","","Required","During the past two weeks, how often has your child started lots more projects than usual or done more risky things than usual?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg10","Integer","","Required","During the past two weeks, how often has your child slept less than usual for him/her but still had a lot of energy?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg11","Integer","","Required","During the past two weeks, how often has your child said he/she felt nervous, anxious, or scared?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg12","Integer","","Required","During the past two weeks, how often has your child not been able to stop worrying?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg13","Integer","","Required","During the past two weeks, how often has your child said he/she couldn’t do things he/she wanted to or should have done, because they made him/her feel nervous?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg14","Integer","","Required","During the past two weeks, how often has your child said he/she heard voice - when there was no one there - speaking about him/her or telling him/her what to do or saying bad things to him/her?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg15","Integer","","Required","During the past two weeks, how often has your child said that he/she had a vision when he/she was completely awake - that is, seen something or someone that no one else could see?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg16","Integer","","Required","During the past two weeks, how often has your child said that he/she had thoughts that kept coming into his/her mind that he/she would do something bad or that something bad would happen to him/her or to someone else?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg17","Integer","","Required","During the past two weeks, how often has your child said he/she felt the need to check on certain things over and over again, like whether a door was locked or whether the stove was turned off?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg18","Integer","","Required","During the past two weeks, how often has your child seemed worried a lot about things he/she touched being dirty or having germs or being poisoned?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg19","Integer","","Required","During the past two weeks, how often has your child said that he/she had to do things in a certain way, like counting or saying special things, to keep something bad from happening?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_pg20","Integer","","Required","In the past two weeks, has your child had an alcoholic beverage (beer, wine, liquor, etc.)?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" -"dsm_cross_pg21","Integer","","Required","In the past two weeks, has your child smoked a cigarette, a cigar, or pipe, or used snuff or chewing tobacco?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" -"dsm_cross_pg22","Integer","","Required","In the past two weeks, has your child used drugs like marijuana, cocaine or crack, club drugs (like Ecstasy), hallucinogens (like LSD), heroin, inhalants or solvents (like glue), or methamphetamine (like speed)?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" -"dsm_cross_pg23","Integer","","Required","In the past two weeks, has your child used any medicine without a doctor's prescription to get high or change the way you feel (e.g., painkillers [like Vicodin], stimulants [like Ritalin or Adderall], sedatives or tranquilizers [like sleeping pills or Valium], or steroids)?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" -"dsm_cross_pg24","Integer","","Required","In the past two weeks, has he/she talked about wanting to kill himself/herself or about wanting to commit suicide?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" -"dsm_cross_pg25","Integer","","Required","Has he/she ever tried to kill himself/herself?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" -"dsm_cross_pg26","Integer","","Required","In what language did you collect the data?","1::20","1 = English; 2 = Chinese-Classical; 3 = Chinese-Simplified; 4 = Croatian; 5 = Czech; 6 = Dutch; 7 = Farsi; 8 = Finnish; 9 = French; 10 = German; 11 = Haitian Creole; 12 = Italian; 13 = Japanese; 14 = Korean; 15 = Polish; 16 = Portuguese; 17 = Romanian; 18 = Serbian; 19 = Spanish; 20 = Turkish","" diff --git a/nda_cde/cde_dsm5crosspg01_template.csv b/nda_cde/cde_dsm5crosspg01_template.csv deleted file mode 100644 index 23bdc5c..0000000 --- a/nda_cde/cde_dsm5crosspg01_template.csv +++ /dev/null @@ -1,2 +0,0 @@ -"cde_dsm5crosspg","01" -"subjectkey","src_subject_id","interview_age","interview_date","sex","dsm_cross_pg1","dsm_cross_pg2","dsm_cross_pg3","dsm_cross_pg4","dsm_cross_pg5","dsm_cross_pg6","dsm_cross_pg7","dsm_cross_pg8","dsm_cross_pg9","dsm_cross_pg10","dsm_cross_pg11","dsm_cross_pg12","dsm_cross_pg13","dsm_cross_pg14","dsm_cross_pg15","dsm_cross_pg16","dsm_cross_pg17","dsm_cross_pg18","dsm_cross_pg19","dsm_cross_pg20","dsm_cross_pg21","dsm_cross_pg22","dsm_cross_pg23","dsm_cross_pg24","dsm_cross_pg25","dsm_cross_pg26" diff --git a/nda_cde/cde_dsm5crossyouth01_definitions.csv b/nda_cde/cde_dsm5crossyouth01_definitions.csv deleted file mode 100644 index 20de617..0000000 --- a/nda_cde/cde_dsm5crossyouth01_definitions.csv +++ /dev/null @@ -1,33 +0,0 @@ -"ElementName","DataType","Size","Required","ElementDescription","ValueRange","Notes","Aliases" -"subjectkey","GUID","","Required","The NDAR Global Unique Identifier (GUID) for research subject","NDAR*","","guid" -"src_subject_id","String","20","Required","Subject ID how it's defined in lab/project","","","" -"interview_age","Integer","","Required","Age in months at the time of the interview/test/sampling/imaging.","0::1440","Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.","" -"interview_date","Date","","Required","Date on which the interview/genetic test/sampling/imaging/biospecimen was completed. MM/DD/YYYY","","","" -"sex","String","20","Required","Sex of subject at birth","M;F; O; NR","M = Male; F = Female; O=Other; NR = Not reported","" -"dsm_cross_ch1","Integer","","Required","During the past two weeks, how often have you been bothered by stomachaches, headaches, or other aches and pains?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch2","Integer","","Required","During the past two weeks, how often have you worried about your health or about getting sick?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch3","Integer","","Required","During the past two weeks, how often have you been bothered by not being able to fall asleep or stay asleep, or by waking up too early?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch4","Integer","","Required","During the past two weeks, how often have you been bothered by not being able to pay attention when you were in class or doing homework or reading a book or playing a game?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch5","Integer","","Required","During the past two weeks, how often have you had less fun doing things than you used to?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch6","Integer","","Required","During the past two weeks, how often have you felt sad or depressed for several hours?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch7","Integer","","Required","During the past two weeks, how often have you felt more irritated or easily annoyed than usual?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch8","Integer","","Required","During the past two weeks, how often have you felt angry or lost your temper?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch9","Integer","","Required","During the past two weeks, how often have you started lots more projects than usual or done more risky things than usual?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch10","Integer","","Required","During the past two weeks, how often have you slept less than usual but still had a lot of energy?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch11","Integer","","Required","During the past two weeks, how often have you felt nervous, anxious, or scared?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch12","Integer","","Required","During the past two weeks, how often have you not been able to stop worrying?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch13","Integer","","Required","During the past two weeks, how often have you not been able to do things you wanted to or should have done, because they made you feel nervous?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch14","Integer","","Required","During the past two weeks, how often have you heard voices - when there was no one there - speaking about you or telling you what to do or saying bad things to you?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch15","Integer","","Required","During the past two weeks, how often have you had visions when you were completely awake, that is, seen something or someone that no one else could see?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch16","Integer","","Required","During the past two weeks, how often have you had thoughts that kept coming into your mind that you would do something bad or that something bad would happen to you or to someone else?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch17","Integer","","Required","During the past two weeks, how often have you felt the need to check on certain things over and over again, like whether a door was locked or whether the stove was turned off?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch18","Integer","","Required","During the past two weeks, how often have you worried a lot about things you touched being dirty or having germs or being poisoned?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch19","Integer","","Required","During the past two weeks, how often have you felt you had to do things in a certain way, like counting or saying special things, to keep something bad from happening?","0::4;-9","0 = Not at all; 1 = Rare, less than a day or two; 2 = Several days; 3 = More than half the days; 4 = Nearly every day; -9 = Missing","" -"dsm_cross_ch20","Integer","","Required","In the past two weeks, have you had an alcoholic beverage (beer, wine, liquor, etc.)?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" -"dsm_cross_ch21","Integer","","Required","In the past two weeks, have you smoked a cigarette, a cigar, or pipe, or used snuff or chewing tobacco?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" -"dsm_cross_ch22","Integer","","Required","In the past two weeks, have you used drugs like marijuana, cocaine or crack, club drugs (like Ecstasy), hallucinogens (like LSD), heroin, inhalants or solvents (like glue), or methamphetamine (like speed)?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" -"dsm_cross_ch23","Integer","","Required","In the past two weeks, have you used any medicine without a doctor's prescription to get high or change the way you feel (e.g., painkillers [like Vicodin], stimulants [like Ritalin or Adderall], sedatives or tranquilizers [like sleeping pills or Valium], or steroids)?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" -"dsm_cross_ch24","Integer","","Required","In the past two weeks, have you thought about killing yourself or committing suicide?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" -"dsm_cross_ch25","Integer","","Recommended","Have you thought about killing yourself or committing suicide?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" -"dsm_cross_ch26","Integer","","Required","In what language did you collect the data?","1::21","1 = English; 2 = Chinese-Classical; 3 = Chinese-Simplified; 4 = Croatian; 5 = Czech; 6 = Dutch; 7 = Farsi; 8 = Finnish; 9 = French; 10 = German; 11 = Haitian Creole; 12 = Italian; 13 = Japanese; 14 = Korean; 15 = Polish; 16 = Portuguese; 17 = Romanian; 18 = Serbian; 19 = Spanish; 20 = Turkish; 21 = Chichewa","" -"dsm_cross_ch25a","Integer","","Required","Have you ever tried to kill yourself?","1;2;-9","1 = Yes; 2 = No; -9 = Missing","" diff --git a/nda_cde/cde_dsm5crossyouth01_template.csv b/nda_cde/cde_dsm5crossyouth01_template.csv deleted file mode 100644 index ec5228b..0000000 --- a/nda_cde/cde_dsm5crossyouth01_template.csv +++ /dev/null @@ -1,2 +0,0 @@ -"cde_dsm5crossyouth","01" -"subjectkey","src_subject_id","interview_age","interview_date","sex","dsm_cross_ch1","dsm_cross_ch2","dsm_cross_ch3","dsm_cross_ch4","dsm_cross_ch5","dsm_cross_ch6","dsm_cross_ch7","dsm_cross_ch8","dsm_cross_ch9","dsm_cross_ch10","dsm_cross_ch11","dsm_cross_ch12","dsm_cross_ch13","dsm_cross_ch14","dsm_cross_ch15","dsm_cross_ch16","dsm_cross_ch17","dsm_cross_ch18","dsm_cross_ch19","dsm_cross_ch20","dsm_cross_ch21","dsm_cross_ch22","dsm_cross_ch23","dsm_cross_ch24","dsm_cross_ch25","dsm_cross_ch26","dsm_cross_ch25a" diff --git a/nda_cde/cde_gad701_definitions.csv b/nda_cde/cde_gad701_definitions.csv deleted file mode 100644 index 0245c90..0000000 --- a/nda_cde/cde_gad701_definitions.csv +++ /dev/null @@ -1,15 +0,0 @@ -"ElementName","DataType","Size","Required","ElementDescription","ValueRange","Notes","Aliases" -"subjectkey","GUID","","Required","The NDAR Global Unique Identifier (GUID) for research subject","NDAR*","","" -"src_subject_id","String","20","Required","Subject ID how it's defined in lab/project","","","" -"interview_age","Integer","","Required","Age in months at the time of the interview/test/sampling/imaging.","0::1440","Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.","" -"interview_date","Date","","Required","Date on which the interview/genetic test/sampling/imaging/biospecimen was completed. MM/DD/YYYY","","","" -"sex","String","20","Required","Sex of subject at birth","M;F; O; NR","M = Male; F = Female; O=Other; NR = Not reported","" -"gad7_1","Integer","","Required","Over the last two weeks, how often have you been bothered by feeling nervous, anxious or on edge?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"gad7_2","Integer","","Required","Over the last two weeks, how often have you been bothered by not being able to stop or control worrying?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"gad7_3","Integer","","Required","Over the last two weeks, how often have you been bothered by worrying too much about different things?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"gad7_4","Integer","","Required","Over the last two weeks, how often have you been bothered by trouble relaxing?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"gad7_5","Integer","","Required","Over the last two weeks, how often have you been bothered by being so restless that it is hard to sit still?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"gad7_6","Integer","","Required","Over the last two weeks, how often have you been bothered by becoming easily annoyed or irritable?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"gad7_7","Integer","","Required","Over the last two weeks, how often have you been bothered by feeling afraid as if something awful might happen?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"gad7_8","Integer","","Required","In what language did you collect the data?","1::70","1 = English; 2 = Arabic for Tunisia; 3 = Assamese for India; 4 = Bulgarian for Bulgaria; 5 = Cebuano for the Philippines; 6 = Chinese for China; 7 = Chinese for the United States; 8 = Croatian for Croatia; 9 = Czech for the Czech Republic; 10 = Danish for Denmark; 11 = Dutch for Belgium; 12 = Dutch for the Netherlands; 13 = Filipino for the Philippines; 14 = Finnish for Finland; 15 = French for Belgium; 16 = French for Canada; 17 = French for France; 18 = French for Switzerland; 19 = French for Tunisia; 20 = German for Austria; 21 = German for Belgium; 22 = Greek for Greece; 23 = Gujarati for India; 24 = Hebrew for Israel; 25 = Hindi for India; 26 = Hungarian for Hungary; 27 = Indonesian for Indonesia; 28 = Italian for Italy; 29 = Italian for Switzerland; 30 = Kannada for India; 31 = Korean for Korea; 32 = Latvian for Latvia; 33 = Lithuanian for Lithuania; 34 = Malay for Malaysia; 35 = Malayalam for India; 36 = Marathi for India; 37 = Norwegian for Norway; 38 = Polish for Poland; 39 = Portuguese for Brazil; 40 = Portuguese for Portugal; 41 = Punjabi for India; 42 = Romanian for Romania; 43 = Russian for Latvia; 44 = Russian for Russia; 45 = Russian for Ukraine; 46 = Simplified Chinese for Mainland China; 47 = Slovakian for Slovakia; 48 = Spanish for Argentina; 49 = Spanish for Columbia; 50 = Spanish for Mexico; 51 = Spanish for Peru; 52 = Spanish for Puerto Rico; 53 = Spanish for Spain; 54 = Spanish for the United States; 55 = Swedish for Finland; 56 = Swedish for Sweden; 57 = Tamil for India; 58 = Telugu for India; 59 = Thai for Thailand; 60 = Traditional Chinese for Hong Kong; 61 = Traditional Chinese for Taiwan; 62 = Turkish for Turkey; 63 = Ukrainian for Ukraine; 64 = Urdu for India; 65 = Nepali; 66 = Kirundi; 67 = Swahili; 68 = Chichewa; 69 = Luganda; 70 = isiXhosa","" -"study","String","100","Recommended","Study; The code for each individual study","","","" diff --git a/nda_cde/cde_gad701_template.csv b/nda_cde/cde_gad701_template.csv deleted file mode 100644 index 4565b71..0000000 --- a/nda_cde/cde_gad701_template.csv +++ /dev/null @@ -1,2 +0,0 @@ -"cde_gad7","01" -"subjectkey","src_subject_id","interview_age","interview_date","sex","gad7_1","gad7_2","gad7_3","gad7_4","gad7_5","gad7_6","gad7_7","gad7_8","study" diff --git a/nda_cde/cde_phq901_definitions.csv b/nda_cde/cde_phq901_definitions.csv deleted file mode 100644 index a6b2c63..0000000 --- a/nda_cde/cde_phq901_definitions.csv +++ /dev/null @@ -1,17 +0,0 @@ -"ElementName","DataType","Size","Required","ElementDescription","ValueRange","Notes","Aliases" -"subjectkey","GUID","","Required","The NDAR Global Unique Identifier (GUID) for research subject","NDAR*","","" -"src_subject_id","String","20","Required","Subject ID how it's defined in lab/project","","","" -"interview_age","Integer","","Required","Age in months at the time of the interview/test/sampling/imaging.","0::1440","Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.","" -"interview_date","Date","","Required","Date on which the interview/genetic test/sampling/imaging/biospecimen was completed. MM/DD/YYYY","","","" -"sex","String","20","Required","Sex of subject at birth","M;F; O; NR","M = Male; F = Female; O=Other; NR = Not reported","" -"phq9_1","Integer","","Required","Over the last two weeks, how often have you been bothered by having little interest or pleasure in doing things?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"phq9_2","Integer","","Required","Over the last two weeks, how often have you been bothered by feeling down, depressed, or hopeless?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"phq9_3","Integer","","Required","Over the last two weeks, how often have you been bothered by trouble falling or staying asleep, or sleeping too much?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"phq9_4","Integer","","Required","Over the last two weeks, how often have you been bothered by feeling tired or having little energy?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"phq9_5","Integer","","Required","Over the last two weeks, how often have you been bothered by poor appetite or overeating?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"phq9_6","Integer","","Required","Over the last two weeks, how often have you been bothered by feeling bad about yourself or that you are a failure or have let yourself or your family down?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"phq9_7","Integer","","Required","Over the last two weeks, how often have you been bothered by trouble concentrating on things, such as reading the newspaper or watching television?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"phq9_8","Integer","","Required","Over the last two weeks, how often have you been bothered by moving or speaking so slowly that other people could have noticed? Or the opposite - being so fidgety or restless that you have been moving around a lot more than usual?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"phq9_9","Integer","","Required","Over the last two weeks, how often have you been bothered by thoughts that you would be better off dead or off hurting yourself in some way?","0::3;-9","0 = Not at all; 1 = Several days; 2 = More than half the days; 3 = Nearly every day; -9 = Missing","" -"phq9_10","Integer","","Required","In what language did you collect the data?","1::86","1 = English; 2 = Africaans for South Africa; 3 = Arabic for Israel; 4 = Arabic for Tunisia; 5 = Assamese for India; 6 = Bengali for India; 7 = Bulgarian for Bulgaria; 8 = Cebuano for the Philippines; 9 = Cebuano-Davao for the Philippines; 10 = Chinese for Singapore; 11 = Croatian for Croatia; 12 = Czech for the Czech Republic; 13 = Danish for Denmark; 14 = Dutch for Belgium; 15 = Dutch for the Netherlands; 16 = Estonian for Estonia; 17 = Filipino for the Philippines; 18 = Finnish for Finland; 19 = French for Belgium; 20 = French for Canada; 21 = French for France; 22 = French for Switzerland; 23 = French for Tunisia; 24 = German for Austria; 25 = German for Belgium; 26 = German for Germany; 27 = German for Switzerland; 28 = Greek for Greece; 29 = Gujarati for India; 30 = Haitian Creole; 31 = Hebrew for Israel; 32 = Hiligaynon for the Philippines; 33 = Hindi for India; 34 = Hungarian for Hungary; 35 = Indonesian for Indonesia; 36 = Italian for Italy; 37 = Italian for Switzerland; 38 = Japanese for Japan; 39 = Kannada for India; 40 = Korean for Korea; 41 = Latvian for Latvia; 42 = Lithuanian for Lithuania; 43 = Malay for Malaysia; 44 = Malay for Singapore; 45 = Malayalam for India; 46 = Mandarin for Malaysia; 47 = Marathi for India; 48 = Norwegian for Norway; 49 = Oriya for India; 50 = Polish for Poland; 51 = Portuguese for Brazil; 52 = Portuguese for Portugal; 53 = Punjabi for India; 54 = Romanian for Romania; 55 = Russian for Estonia; 56 = Russian for Israel; 57 = Russian for Latvia; 58 = Russian for Lithuania; 59 = Russian for Russia; 60 = Russian for Ukraine; 61 = Serbian for Serbia; 62 = Simplified Chinese for Mainland China; 63 = Slovakian for Slovakia; 64 = Spanish for Chile; 65 = Spanish for Columbia; 66 = Spanish for Mexico; 67 = Spanish for Peru; 68 = Spanish for Puerto Rico; 69 = Spanish for Spain; 70 = Spanish for the United States; 71 = Swahili for Africa; 72 = Swedish for Finland; 73 = Swedish for Sweden; 74 = Tamil for India; 75 = Tamil for Singapore; 76 = Telugu for India; 77 = Thai for Thailand; 78 = Traditional Chinese for Hong Kong; 79 = Traditional Chinese for Taiwan; 80 = Turkish for Turkey; 81 = Ukrainian for Ukraine; 82 = Nepali; 83 = Kirundi; 84 = Chichewa; 85 = Luganda; 86 = isiXhosa","" -"study","String","100","Recommended","Study; The code for each individual study","","","" diff --git a/nda_cde/cde_phq901_template.csv b/nda_cde/cde_phq901_template.csv deleted file mode 100644 index fa3ad5e..0000000 --- a/nda_cde/cde_phq901_template.csv +++ /dev/null @@ -1,2 +0,0 @@ -"cde_phq9","01" -"subjectkey","src_subject_id","interview_age","interview_date","sex","phq9_1","phq9_2","phq9_3","phq9_4","phq9_5","phq9_6","phq9_7","phq9_8","phq9_9","phq9_10","study" diff --git a/nda_cde/cde_rcads01_definitions.csv b/nda_cde/cde_rcads01_definitions.csv deleted file mode 100644 index ed7e94f..0000000 --- a/nda_cde/cde_rcads01_definitions.csv +++ /dev/null @@ -1,32 +0,0 @@ -"ElementName","DataType","Size","Required","ElementDescription","ValueRange","Notes","Aliases" -"subjectkey","GUID","","Required","The NDAR Global Unique Identifier (GUID) for research subject","NDAR*","","" -"src_subject_id","String","20","Required","Subject ID how it's defined in lab/project","","","" -"interview_age","Integer","","Required","Age in months at the time of the interview/test/sampling/imaging.","0::1440","Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.","" -"interview_date","Date","","Required","Date on which the interview/genetic test/sampling/imaging/biospecimen was completed. MM/DD/YYYY","","","" -"sex","String","20","Required","Sex of subject at birth","M;F; O; NR","M = Male; F = Female; O=Other; NR = Not reported","" -"rcads01","Integer","","Required","My child feels sad or empty","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads02","Integer","","Required","My child worries when he/she thinks he/she has done poorly at something","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads03","Integer","","Required","My child feels afraid of being alone at home","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads04","Integer","","Required","Nothing is much fun for my child anymore","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads05","Integer","","Required","My child worries that something awful will happen to someone in the family","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads06","Integer","","Required","My child is afraid of being in crowded places (like shopping centers, the movies, buses, busy playgrounds)","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads07","Integer","","Required","My child worries what other people think of him/her","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads08","Integer","","Required","My child has trouble sleeping","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads09","Integer","","Required","My child feels scared to sleep on his/her own","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads10","Integer","","Required","My child has problems with his/her appetite","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads11","Integer","","Required","My child suddenly becomes dizzy or faint when there is no reason for this","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads12","Integer","","Required","My child has to do somethings over and over again (like washing hands, cleaning, or putting things in a certain order)","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads13","Integer","","Required","My child has no energy for things","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads14","Integer","","Required","My child suddenly starts to tremble or shake when there is no reason for this","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads15","Integer","","Required","My child cannot think clearly","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads16","Integer","","Required","My child feels worthless","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads17","Integer","","Required","My child has to think of special thoughts (like numbers or words) to stop bad things from happening","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads18","Integer","","Required","My child thinks about death","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads19","Integer","","Required","My child feels like he/she does not want to move","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads20","Integer","","Required","My child worries that he/she will suddenly get a scared feeling when there is nothing to be afraid of","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads21","Integer","","Required","My child is tired a lot","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads22","Integer","","Required","My child feels afraid that he/she will make a fool of him/herself in front of people","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads23","Integer","","Required","My child has to do some things in just the right way to stop bad things from happening","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads24","Integer","","Required","My child feels restless","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads25","Integer","","Required","My child worries that something bad will happen to him/her","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads26","Integer","","Required","In what language did you collect the data?","1::20","1 = English; 2 = Chinese; 3 = Danish; 4 = Dutch; 5 = Finnish; 6 = French; 7 = German; 8 = Greek; 9 = Icelandic; 10 = Japanese; 11 = Korean; 12 = Norwegian; 13 = Persian; 14 = Polish; 15 = Slovene; 16 = Portuguese; 17 = Spanish; 18 = Swedish; 19 = Urdu; 20 = Turkish","" diff --git a/nda_cde/cde_rcads01_template.csv b/nda_cde/cde_rcads01_template.csv deleted file mode 100644 index d22702f..0000000 --- a/nda_cde/cde_rcads01_template.csv +++ /dev/null @@ -1,2 +0,0 @@ -"cde_rcads","01" -"subjectkey","src_subject_id","interview_age","interview_date","sex","rcads01","rcads02","rcads03","rcads04","rcads05","rcads06","rcads07","rcads08","rcads09","rcads10","rcads11","rcads12","rcads13","rcads14","rcads15","rcads16","rcads17","rcads18","rcads19","rcads20","rcads21","rcads22","rcads23","rcads24","rcads25","rcads26" diff --git a/nda_cde/cde_rcadsyouth01_definitions.csv b/nda_cde/cde_rcadsyouth01_definitions.csv deleted file mode 100644 index c08d24d..0000000 --- a/nda_cde/cde_rcadsyouth01_definitions.csv +++ /dev/null @@ -1,32 +0,0 @@ -"ElementName","DataType","Size","Required","ElementDescription","ValueRange","Notes","Aliases" -"subjectkey","GUID","","Required","The NDAR Global Unique Identifier (GUID) for research subject","NDAR*","","guid" -"src_subject_id","String","20","Required","Subject ID how it's defined in lab/project","","","" -"interview_age","Integer","","Required","Age in months at the time of the interview/test/sampling/imaging.","0::1440","Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.","" -"interview_date","Date","","Required","Date on which the interview/genetic test/sampling/imaging/biospecimen was completed. MM/DD/YYYY","","","" -"sex","String","20","Required","Sex of subject at birth","M;F; O; NR","M = Male; F = Female; O=Other; NR = Not reported","" -"rcads_y01","Integer","","Required","I feel sad or empty","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y02","Integer","","Required","I worry when I think I have done poorly at something","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y03","Integer","","Required","I would be afraid of being on my own at home","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y04","Integer","","Required","Nothing is much fun for me anymore","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y05","Integer","","Required","I worry that something awful will happen to someone in the family","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y06","Integer","","Required","I am afraid of being in crowded places (like shopping centers, the movies, buses, busy playgrounds)","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y07","Integer","","Required","I worry what other people think of me","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y08","Integer","","Required","I have trouble sleeping","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y09","Integer","","Required","I feel scared if I have to sleep on my own","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y10","Integer","","Required","I have problems with my appetite","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y11","Integer","","Required","I suddenly become dizzy or faint when there is no reason for this","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y12","Integer","","Required","I have to do somethings over and over again (like washing hands, cleaning, or putting things in a certain order)","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y13","Integer","","Required","I have no energy for things","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y14","Integer","","Required","I suddenly start to tremble or shake when there is no reason for this","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y15","Integer","","Required","I cannot think clearly","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y16","Integer","","Required","I feel worthless","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y17","Integer","","Required","I have to think of special thoughts (like numbers or words) to stop bad things from happening","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y18","Integer","","Required","I think about death","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y19","Integer","","Required","I feel like I don't want to move","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y20","Integer","","Required","I worry that I will suddenly get a scared feeling when there is nothing to be afraid of","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y21","Integer","","Required","I am tired a lot","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y22","Integer","","Required","I feel afraid that I will make a fool of myself in front of people","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y23","Integer","","Required","I have to do some things in just the right way to stop bad things from happening","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y24","Integer","","Required","I feel restless","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y25","Integer","","Required","I worry that something bad will happen to me","1::4;-9","1 = Never; 2 = Sometimes; 3 = Often; 4 = Always; -9 = Missing","" -"rcads_y26","Integer","","Required","In what language did you collect the data?","1::21","1 = English; 2 = Chinese; 3 = Danish; 4 = Dutch; 5 = Finnish; 6 = French; 7 = German; 8 = Greek; 9 = Icelandic; 10 = Japanese; 11 = Korean; 12 = Norwegian; 13 = Persian; 14 = Polish; 15 = Slovene; 16 = Portuguese; 17 = Spanish; 18 = Swedish; 19 = Urdu; 20 = Turkish; 21 = Chichewa","" diff --git a/nda_cde/cde_rcadsyouth01_template.csv b/nda_cde/cde_rcadsyouth01_template.csv deleted file mode 100644 index ab49527..0000000 --- a/nda_cde/cde_rcadsyouth01_template.csv +++ /dev/null @@ -1,2 +0,0 @@ -"cde_rcadsyouth","01" -"subjectkey","src_subject_id","interview_age","interview_date","sex","rcads_y01","rcads_y02","rcads_y03","rcads_y04","rcads_y05","rcads_y06","rcads_y07","rcads_y08","rcads_y09","rcads_y10","rcads_y11","rcads_y12","rcads_y13","rcads_y14","rcads_y15","rcads_y16","rcads_y17","rcads_y18","rcads_y19","rcads_y20","rcads_y21","rcads_y22","rcads_y23","rcads_y24","rcads_y25","rcads_y26" diff --git a/nda_cde/cde_whodas01_definitions.csv b/nda_cde/cde_whodas01_definitions.csv deleted file mode 100644 index aed75ef..0000000 --- a/nda_cde/cde_whodas01_definitions.csv +++ /dev/null @@ -1,20 +0,0 @@ -"ElementName","DataType","Size","Required","ElementDescription","ValueRange","Notes","Aliases" -"subjectkey","GUID","","Required","The NDAR Global Unique Identifier (GUID) for research subject","NDAR*","","guid" -"src_subject_id","String","20","Required","Subject ID how it's defined in lab/project","","","" -"interview_age","Integer","","Required","Age in months at the time of the interview/test/sampling/imaging.","0::1440","Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.","" -"interview_date","Date","","Required","Date on which the interview/genetic test/sampling/imaging/biospecimen was completed. MM/DD/YYYY","","","" -"sex","String","20","Required","Sex of subject at birth","M;F; O; NR","M = Male; F = Female; O=Other; NR = Not reported","" -"whodas_1","Integer","","Required","In the past 30 days, how much difficulty did you have in standing for long periods such as 30 minutes?","0::4;-9","0=None; 1=Mild; 2=Moderate; 3=Severe; 4=Extreme or cannot do; -9 = Missing","who_s1" -"whodas_2","Integer","","Required","In the past 30 days, how much difficulty did you have in taking care of your household responsibilities?","0::4;-9","0=None; 1=Mild; 2=Moderate; 3=Severe; 4=Extreme or cannot do; -9 = Missing","who_s2" -"whodas_3","Integer","","Required","In the past 30 days, how much difficulty did you have in learning a new task, for example, learning how to get to a new place?","0::4;-9","0=None; 1=Mild; 2=Moderate; 3=Severe; 4=Extreme or cannot do; -9 = Missing","who_s3" -"whodas_4","Integer","","Required","In the past 30 days, how much of a problem did you have in joining in community activities (for example, festivities, religious or other activities) in the same way as anyone else can?","0::4;-9","0=None; 1=Mild; 2=Moderate; 3=Severe; 4=Extreme or cannot do; -9 = Missing","who_s4" -"whodas_5","Integer","","Required","In the past 30 days, how have you been emotionally affected by your health problems?","0::4;-9","0=None; 1=Mild; 2=Moderate; 3=Severe; 4=Extreme or cannot do; -9 = Missing","who_s5" -"whodas_6","Integer","","Required","In the past 30 days, how much difficulty did you have in concentrating on doing something for ten minutes?","0::4;-9","0=None; 1=Mild; 2=Moderate; 3=Severe; 4=Extreme or cannot do; -9 = Missing","who_s6" -"whodas_7","Integer","","Required","In the past 30 days, how much difficulty did you have in walking a long distance such as a kilometer or half a mile?","0::4;-9","0=None; 1=Mild; 2=Moderate; 3=Severe; 4=Extreme or cannot do; -9 = Missing","who_s7" -"whodas_8","Integer","","Required","In the past 30 days, how much difficulty did you have in washing your whole body?","0::4;-9","0=None; 1=Mild; 2=Moderate; 3=Severe; 4=Extreme or cannot do; -9 = Missing","who_s8" -"whodas_9","Integer","","Required","In the past 30 days, how much difficulty did you have in getting dressed?","0::4;-9","0=None; 1=Mild; 2=Moderate; 3=Severe; 4=Extreme or cannot do; -9 = Missing","who_s9" -"whodas_10","Integer","","Required","In the past 30 days, how much difficulty did you have in dealing with people you do not know?","0::4;-9","0=None; 1=Mild; 2=Moderate; 3=Severe; 4=Extreme or cannot do; -9 = Missing","who_s10" -"whodas_11","Integer","","Required","In the past 30 days, how much difficulty did you have in maintaining a friendship?","0::4;-9","0=None; 1=Mild; 2=Moderate; 3=Severe; 4=Extreme or cannot do; -9 = Missing","who_s11" -"whodas_12","Integer","","Required","In the past 30 days, how much difficulty did you have in your day-to-day work?","0::4;-9","0=None; 1=Mild; 2=Moderate; 3=Severe; 4=Extreme or cannot do; -9 = Missing","who_s12" -"whodas_13","Integer","","Required","In what language did you collect the data?","1::34","1 = English; 2 = Afrikaans; 3 = Bengali; 4 = Bulgarian; 5 = Chinese; 6 = Danish; 7 = Dutch; 8 = Farsi; 9 = Finnish; 10 = French; 11 = German; 12 = Greek; 13 = Hebrew; 14 = Hindi; 15 = Hungarian; 16 = Italian; 17 = Japanese; 18 = Korean; 19 = Malayalam; 20 = Nepali; 21 = Norwegian; 22 = Polish; 23 = Portuguese; 24 = Serbian; 25 = Sesotho; 26 = Spanish; 27 = Swedish; 28 = Thai; 29 = Turkish; 30 = Kirundi; 31 = Swahili; 32 = Chichewa; 33 = Luganda; 34 = isiXhosa","" -"study","String","100","Recommended","Study; The code for each individual study","","","" diff --git a/nda_cde/cde_whodas01_template.csv b/nda_cde/cde_whodas01_template.csv deleted file mode 100644 index 7fa5a01..0000000 --- a/nda_cde/cde_whodas01_template.csv +++ /dev/null @@ -1,2 +0,0 @@ -"cde_whodas","01" -"subjectkey","src_subject_id","interview_age","interview_date","sex","whodas_1","whodas_2","whodas_3","whodas_4","whodas_5","whodas_6","whodas_7","whodas_8","whodas_9","whodas_10","whodas_11","whodas_12","whodas_13","study" diff --git a/nda_cde/ndar_subject01_definitions.csv b/nda_cde/ndar_subject01_definitions.csv deleted file mode 100644 index 72a4cf3..0000000 --- a/nda_cde/ndar_subject01_definitions.csv +++ /dev/null @@ -1,171 +0,0 @@ -"ElementName","DataType","Size","Required","Condition","ElementDescription","ValueRange","Notes","Aliases" -"subjectkey","GUID","","Required","","The NDAR Global Unique Identifier (GUID) for research subject","NDAR*","","CandidateGUID,candidateguid,guid,nihguid,plot_ndar_guid,pseudo_guid,subject_key" -"src_subject_id","String","20","Required","","Subject ID how it's defined in lab/project","","","IBISID,child_id_full,clinical_barcode,demo_study_id,hcpa_id,ibisid,participant_id,participantid,pid,plot_id,plotstudy_full_id,record_id,session_id,src_subject,subject_id,subjectid,subjectnumber,subjid_display" -"interview_date","Date","","Required","","Date on which the interview/genetic test/sampling/imaging/biospecimen was completed. MM/DD/YYYY","","","Date_taken,assessment_dt,bl_visit_date,consentdate,consented_study,datacollecteddate,date,date_demographics,date_interview_ses,date_of_interview_contact,date_taken,interviewdate,intvdate,plot_visit1_date,pp_date,profile_date,testing_date,visit_date" -"interview_age","Integer","","Required","","Age in months at the time of the interview/test/sampling/imaging.","0::1440","Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.","Candidate_Age_in_Months,age,age_a,age_m_consent,ageateval,ch_age,demo_age,demqage,intvage,plot_age_totalmonths,profile_age,test_age,total_age_in_months" -"sex","String","20","Required","","Sex of subject at birth","M;F; O; NR","M = Male; F = Female; O=Other; NR = Not reported","ch_sex,demo_sex,demqsex,gender,genderid,plot_child_sex,sex,sex_a" -"race","String","30","Required","","Race of study subject","American Indian/Alaska Native; Asian; Hawaiian or Pacific Islander; Black or African American; White; More than one race; Unknown or not reported; Other Non-White; Other","","demo_race,demo_white,demqrea2,race_dem,raceid" -"ethnic_group","String","255","Recommended","","Ethnic group","","","demo_ethnicity,demqrea1,ethnicity_dem,ethnicityid,hispanic" -"phenotype","String","400","Required","","Phenotype/diagnosis for the subject","","","Cohort,SubprojectID,ados_scoresumm_adosdiag,cohort,diagnosis,genderid,group,p1selectdiagnosis,project_category,race_dem,scid_diagnosis,scoresumm_overalldiag,subprojectid" -"phenotype_description","String","4000","Required","","Description of the phenotype for the subject","","","developmental_diff_sib_1,fmr1_status,p2whatisyourlevelofcertainty" -"twins_study","String","100","Required","","Is this study of twins?","Yes;No","","" -"sibling_study","String","50","Required","","Was it sibling study? Study of sibling(s) of autistic child.","Yes;No","","" -"family_study","String","100","Required","","Was it family study? Study of biological mother, biological father and/or sibling of proband.","Yes;No","","" -"family_user_def_id","String","25","Conditional","family_study == 'Yes'","Family Pedigree User-Defined ID","","","familyid,id" -"subjectkey_mother","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for subject's biological mother","NDAR*","","subject_key_mother" -"src_mother_id","String","100","Conditional","notNull(subjectkey_mother)","site specific mother ID","","","biomother,mat_id,motherid,src_subject_id_mother" -"subjectkey_father","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for subject's biological father","NDAR*","","subject_key_father" -"src_father_id","String","100","Conditional","notNull(subjectkey_father)","site specific father ID","","","fatherid,pat_id,src_subject_id_father" -"subjectkey_sibling1","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for subject's sibling","NDAR*","","ProbandGUID" -"src_sibling1_id","String","100","Conditional","notNull(subjectkey_sibling1)","site specific sibling1 ID","","","probandid" -"sibling_type1","String","255","Conditional","notNull(subjectkey_sibling1)","Type of Sibling","Full Brother FB; Half Mother Brother HMB; Half Father Brother HFB; Full Sister FS; Half Mother Sister HMS; Half Father Sister HFS; Adopted Brother AB; Adopted Sister AS; Unknown","","ProbandGender,relationship_sib_1" -"subjectkey_sibling2","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for subject's sibling","NDAR*","","" -"src_sibling2_id","String","100","Recommended","","site specific sibling2 ID","","","" -"sibling_type2","String","255","Recommended","","sibling type","Full Brother FB; Half Mother Brother HMB; Half Father Brother HFB; Full Sister FS; Half Mother Sister HMS; Half Father Sister HFS; Adopted Brother AB; Adopted Sister AS; Unknown","","" -"subjectkey_sibling3","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for subject's sibling","NDAR*","","" -"src_sibling3_id","String","100","Recommended","","site specific sibling3 ID","","","" -"sibling_type3","String","255","Recommended","","sibling type","Full Brother FB; Half Mother Brother HMB; Half Father Brother HFB; Full Sister FS; Half Mother Sister HMS; Half Father Sister HFS; Adopted Brother AB; Adopted Sister AS; Unknown","","" -"subjectkey_sibling4","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for subject's sibling","NDAR*","","" -"src_sibling4_id","String","100","Recommended","","site specific sibling4 ID","","","" -"sibling_type4","String","255","Recommended","","sibling type","Full Brother FB; Half Mother Brother HMB; Half Father Brother HFB; Full Sister FS; Half Mother Sister HMS; Half Father Sister HFS; Adopted Brother AB; Adopted Sister AS; Unknown","","" -"zygosity","String","255","Conditional","twins_study == 'Yes'","Zygosity","monozygous; dizygous; trizygotic; 999","999=unknown","multibirthtypeid" -"sample_taken","String","50","Required","","Was a sample taken at this interview/during this project time","Yes;No","","dna_sample_collected" -"sample_id_original","String","100","Conditional","sample_taken == 'Yes'","Original, user-defined Sample ID","","","" -"sample_description","String","3500","Conditional","sample_taken == 'Yes'","Sample description: tissue type, i.e. blood, saliva, brain etc.","whole blood; saliva; brain; urine; serum; plasma; CSF; IPS; Fibroblast; Neuronal Progenitor; skin biopsy; temporal cortex; lymphoblastoid cell line; unknown; semen; frontal cortex; parietal cortex; basal ganglia; Placenta; hair; occipital visual cortex; cerebellum; spleen; stool; muscle; kidney; liver; heart; cord blood; nasal swab; DNA; RNA; breastmilk; buccal; oral cells; rectal swab; cervicovaginal swab","","" -"biorepository_name","String","100","Conditional","sample_taken == 'Yes'","Biorepository where sample is stored","","","subjecttype" -"sample_id_biorepository","String","100","Conditional","sample_taken == 'Yes'","Biorepository Sample ID","","","biospc_rutgers_id,rucdrnum" -"patient_id_biorepository","String","100","Conditional","notNull(biorepository_name)","Biorepository Patient ID","","","dxsmryid" -"cell_id_original","String","100","Recommended","","Original, user-defined cell line ID","","","" -"cell_id_biorepository","String","100","Recommended","","Biorepository cell line ID","","","" -"agre_subject_id","String","100","Recommended","","AGRE subject ID","","","" -"sfari_subject_id","String","100","Recommended","","SFARI subject ID","","","" -"cpea_site","String","100","Recommended","","CPEA/STAART site name","","","" -"cpea_id","String","100","Recommended","","CPEA/STAART subject ID","","","" -"blood_id","String","100","Recommended","","blood ID","","","dna_sample_lab_id" -"adi_dx","String","15","Recommended","","ADI: Diagnosis","","","" -"ados_dx","String","15","Recommended","","ADOS Diagnosis","","","" -"agp_family_id","String","100","Recommended","","AGP family ID","","","" -"agp_subject_id","String","100","Recommended","","AGP subject ID","","","" -"site","String","101","Recommended","","Site","","Study Site","biorepository_site_id,fxs_site_name_other,siteid" -"comments_misc","String","4000","Recommended","","Miscellaneous comments on study, interview, methodology relevant to this form data","","","demo_comments,dna_comments,fspgod,genderdescr,pi_staff" -"week","Float","","Recommended","","Week in level/study","","99=week 10-week 14","" -"study","String","100","Recommended","","Study; The code for each individual study","","","biorepository_study_number,dna_sample_usable" -"reg_edu","Integer","","Recommended","","Education","1::34; 999","1=None; 2=Preschool; 3=Kindergarten; 4=1st grade; 5=2nd grade; 6=3rd grade; 7=4th grade; 8=5th grade; 9=6th grade; 10=7th grade; 11=8th grade; 12=9th grade; 13=10th grade; 14=11th grade; 16=High School Graduate; 17=GED; 18=Some college credit but less than 1 year; 19= Some college, no degree; 20=Associates degree (e.g., AA, AS); 21=Bachelor's degree (e.g., BA, AB, BS); 22=Masters degree (e.g., MA, MS, MEng, MEd, MSW, MBA); 23=Professional degree (e.g., MD, DDS, DVM, LLB, JD); 24=Doctorate degree (e.g., PhD, EdD); 25=One or more years of college at a 2-year program, no degree; 26=One year of college at a 4-year program, no degree; 27=Two years of college at a 4-year program, no degree; 28=Three years or more of college at a 4-year program, no degree; 29= Trade or vocational school; 30=Eighth grade or less; 999=Unknown","" -"reg_mother_edu","Integer","","Recommended","","Mother Education","1::33; 999","1=None; 2=Preschool; 3=Kindergarten; 4=1st grade; 5=2nd grade; 6=3rd grade; 7=4th grade; 8=5th grade; 9=6th grade; 10=7th grade; 11=8th grade; 12=9th grade; 13=10th grade; 14=11th grade; 16=High School Graduate; 17=GED; 18=Some college credit but less than 1 year; 19= Some college, no degree; 20=Associates degree (e.g., AA, AS); 21=Bachelor's degree (e.g., BA, AB, BS); 22=Masters degree (e.g., MA, MS, MEng, MEd, MSW, MBA); 23=Professional degree (e.g., MD, DDS, DVM, LLB, JD); 24=Doctorate degree (e.g., PhD, EdD); 25=One or more years of college at a 2-year program, no degree; 26=One year of college at a 4-year program, no degree; 27=Two years of college at a 4-year program, no degree; 28=Three years or more of college at a 4-year program, no degree; 29= Trade or vocational school; 30=Eighth grade or less; 31 = Some High School (9th-11th grade); 32 = Did not complete high school; 33 = Postgraduate degree (MA, MBA, PhD, JD, MD); 999=Unknown","demqmom2" -"ca243","Integer","","Recommended","","What handedness do you consider yourself?","1::3","1=Right; 2=Left; 3=Mixed","overall_handedness,reg_handedness" -"ccc2english","Integer","","Recommended","","Does the subject speak English as a primary language?","0;1;-9","0 = No; 1 = Yes; -9 = Missing value","" -"primary_language","String","255","Recommended","","Subject's Primary Language","","","demqlangchild1" -"physiological_responses_type","String","100","Recommended","","Description of monitored physiological responses","","","" -"reg_father_edu","Integer","","Recommended","","Father Education","1::33;999","1=None; 2=Preschool; 3=Kindergarten; 4=1st grade; 5=2nd grade; 6=3rd grade; 7=4th grade; 8=5th grade; 9=6th grade; 10=7th grade; 11=8th grade; 12=9th grade; 13=10th grade; 14=11th grade; 16=High School Graduate; 17=GED; 18=Some college credit but less than 1 year; 19= Some college, no degree; 20=Associates degree (e.g., AA, AS); 21=Bachelors degree (e.g., BA, AB, BS); 22=Masters degree (e.g., MA, MS, MEng, MEd, MSW, MBA); 23=Professional degree (e.g., MD, DDS, DVM, LLB, JD); 24=Doctorate degree (e.g., PhD, EdD); 25=One or more years of college at a 2-year program, no degree; 26=One year of college at a 4-year program, no degree; 27=Two years of college at a 4-year program, no degree; 28=Three years or more of college at a 4-year program, no degree; 29= Trade or vocational school; 30=Eighth grade or less; 31 = Some High School (9th-11th grade); 32 = Did not complete high school; 33 = Postgraduate degree (MA, MBA, PhD, JD, MD); 999=Unknown","demqdad2" -"employ_status","Integer","","Recommended","","Current employment status","1::13","1=Unemployed; 2=Unemployed Stay-at-home parent; 3=Part-Time Student; 4=Full-Time Student; 5=Disability/Unemployed; 6=Disability/Part-Time Employment; 7=Employed Part Time; 8=Employed Full Time; 9=Retired/Part-Time Employment; 10=Retired/Unemployed.; 11 = Student; 12 = Caring for children, elders and house; 13 = Unemployed, volunteer work","" -"bkgrnd_med","String","1020","Recommended","","Medication information","","","medication" -"demo_logfinc","Float","","Recommended","","log of family income from wave one of the study","","","" -"demo_wt_n_nr","Float","","Recommended","","sampling weights used to account for sample design and non response rate","","","" -"demo_stratum","Float","","Recommended","","stratum","","","" -"grade","String","50","Recommended","","Current Grade","","","" -"service_specialed","String","5","Recommended","","Special Education","Yes; No","","special_education" -"asisped","String","200","Recommended","","Specify special education services","","","special_education_spc" -"brain_injury","Integer","","Recommended","","Brain Injury?","1::3","1=Yes; 2=No; 3=NA","" -"trt_grp","String","10","Recommended","","Treatment Group Assignment","1;1AO;1CT;2; 3;4;5;6;7;8;9;10;11;12;13;14; O; P; CCA; GCT; TCT; TAU; CGC; ESDM; NA; EG;EIBI;IG;CG","1=Group 1 first 8 weeks; 2=Group 2; 3=Group 3; 4 =active; 5=sham; 6=none; 7=ESDM High intensity; 8=ESDM Low intensity; 9=EIBI High intensity; 10=EIBI Low intensity; ESDM = Early Start Denver Model; EIBI = Early and Intensive Behavioral Intervention; 11 = Navigator; 12 = Care manager; 13=Waitlist Control; 14=Treatment; 1AO=Group 1 8 week add on; 1CT=Group 1 8 week cross taper; O=Oxytocin; P=Placebo; CCA=Community Control Arm; GCT=Generalized Cognitive Training; TCT=Targeted Cognitive Training; TAU=Treatment as Usual; CGC = Computer Games Control; NA=not assigned to treatment group; EG= Experimental Group; IG= Intervention Group; CG= Control Group","treatment" -"version_form","String","121","Recommended","","Form used/assessment name","","","redcap_event_name" -"visit","String","60","Recommended","","Visit name","","","eventname,visit_checklist,visits" -"reason_nint","Integer","","Recommended","","Reason for not conducting interview","0::9","0=Conducted interview; 1=Withdrawn by CPI; 2=Withdrawn voluntarily; 3=Incoherent speech for any cause; 4=Poverty of content or too little speech; 5=Disturbance of consciousness; 6=Lost to follow-up; 7=Refused; 8=Other reasons [specify...]","reason" -"reason_nint_other","String","4000","Recommended","","Reason Other - Please specify","","","reason_other" -"liv_sit","Integer","","Recommended","","Living Situation","1::3;-9","1=Hospital inpatient; 2=Supported housing; 3=Independent; -9 = Unknown/Not Reported","living" -"height_met","String","50","Recommended","","Height - Metric Unit","","999 = Missing; -999 = No Data","height" -"weight_met","Float","","Recommended","","Weight - Metric Unit","","999 = Missing; -999 = No Data","weight" -"bmi","Float","","Recommended","","body mass index of subject","","-9=Missing; -5=Item/Instrument not collected; -2=Not collected at this time point","" -"q013","Integer","","Recommended","","Adverse Events: assessment completed?","0; 1","""0=no, 1=yes""","adverse" -"medchng","Integer","","Recommended","","Changes made to meds","0;1;-7","0=No; 1=Yes; -7=Refused","medication" -"capacity","Integer","","Recommended","","Ongoing capacity to consent","","0=No; 1=Yes","" -"blood_1","Integer","","Recommended","","Consented to blood collection","","0=No; 1=Yes","" -"blood_2","Integer","","Recommended","","Taken for blood collection","","0=No; 1=Yes","" -"country","Integer","","Recommended","","Personal details. Country of origin","1::6","1=UK; 2=West Indies; 3=India and Asia; 4=Africa; 5=Other European; 6=Other","demo_5a" -"country_origin","String","100","Recommended","","Country of Origin","","","demo_5b" -"demo_6","Integer","","Recommended","","Are you currently employed or in school?","0;1; 9999","1= Yes; 0= No; 9999= no data","" -"year_mta","Integer","","Recommended","","Year in study","","","visit_year,visit_year�" -"chronic_ticdisorder_motor","Integer","","Recommended","","DSM-IV-tr Chronic motor tic disorder","0;1;9","0=Unaffected; 1=Definite; 9=Unratable","" -"chronic_ticdisorder_vocal","Integer","","Recommended","","DSM-IV-tr Chronic vocal tic disorder","0;1;9","0=Unaffected; 1=Definite; 9=Unratable","" -"chronicticdisorder_combined","Integer","","Recommended","","Chronic tic disorder- combined type (one motor and one vocal tic)","0;1;9","0=Unaffected; 1=Definite; 9=Unratable","" -"provisional_ticdisorder","Integer","","Recommended","","Provisional Tic Disorder (DSM-V)","0;1;9","0=Unaffected; 1=Definite; 9=Unratable","" -"transient_ticdisorder","Integer","","Recommended","","DSM-IV-tr Transient Tic Disorder","0;1;9","0=Unaffected; 1=Definite; 9=Unratable","" -"tic_disorder_nos","Integer","","Recommended","","DSM-IV-tr Tic Disorder NOS","0;1;9","0=Unaffected; 1=Definite; 9=Unratable","" -"p53i3","Integer","","Recommended","","Transient Tic Disorder - Age at onset of first episode (months)","","","ticageonset" -"ticsxcur","Integer","","Recommended","","Current tic symptoms (past week)","0;1;9","0=No; 1=Yes; 9=Unratable","" -"ticdxoverride","Integer","","Recommended","","Tic disorder override- clinician override of algorithm","0;1","0=False=No override; 1=True=Override","" -"ocddiagnoisid","Integer","","Recommended","","DSM-IV-tr OC disorders","0::3;9","0=No OC disorder; 1=OCD; 2=OC subclinical; 3=OC symptoms; 9=Unratable","" -"ocddiagnois","String","50","Recommended","","OC disorder descriptions","","","" -"hxocdage","Integer","","Recommended","","Onset of OCD","","","ocageonset" -"ocsxcur","Integer","","Recommended","","Current OC symptoms (past week)","0;1;9","0=No; 1=Yes; 9=Unratable","" -"ocdxoverride","Integer","","Recommended","","OC disorder override- clinician override of algorithm","0;1","0=False=No override; 1=True=Override","" -"trichid","Integer","","Recommended","","DSM-IV-tr Trichotillomania","0;1;9","0=Unaffected; 1=Definite; 9=Unratable","" -"trichage","Integer","","Recommended","","Trichotillomania (hairpulling) Onset Age","","months","trichageonset" -"trichsxcur","Integer","","Recommended","","Current Trich symptoms (past week)","0;1;9","0=No; 1=Yes; 9=Unratable","" -"adhd_combined","Integer","","Recommended","","ADHD: Combined type present in past 6 months","0;1; 9","0 = No; 1 = Yes; 9=unable to rate","" -"adhd_predom_inattent","Integer","","Recommended","","DSM-IV-tr ADHD predominantly inattentive subtype","0;1;9","0=Unaffected; 1=Definite; 9=Unratable","" -"adhd_predom_hyperimpul","Integer","","Recommended","","DSM-IV-tr ADHD predominantly hyperactive-Impulusive subtype","0;1;9","0=Unaffected; 1=Definite; 9=Unratable","" -"grantnum","Integer","","Recommended","","Grant number (1st or 2nd)","1;2","1=grant1 (2011); 2=grant2 (2018)","" -"adhd_subclinical","Integer","","Recommended","","Subclinical ADHD","0;1;9","0=Unaffected; 1=Definite; 9=Unratable","" -"ksads_adhd_age","Integer","","Recommended","","ADHD Age of Onset, months","","","adhd_ageonset" -"adhdsxcur","Integer","","Recommended","","Current ADHD symptoms (past week)","0;1;9","0=No; 1=Yes; 9=Unratable","" -"adhddxoverride","String","20","Recommended","","ADHD disorder override- clinician override of algorithm","0;1","0=False=No override; 1=True=Override","" -"flag_atypical","Integer","","Recommended","","Flagged for Atypical presentation","0;1","0=No flag; 1=Flag","" -"flag_psychosis","Integer","","Recommended","","Flagged for Psychosis","0;1","0=No flag; 1=Flag","" -"flag_pdd_asd","Integer","","Recommended","","Flagged for PDD or Autism Spectrum","0;1","0=No flag; 1=Flag","" -"flag_other_neurolog","Integer","","Recommended","","Flagged for Other Neurological condition","0;1","0=No flag; 1=Flag","" -"flag_congenital_anom","Integer","","Recommended","","Flagged for Congenital anomalies","0;1","0=No flag; 1=Flag","" -"flag_genetic_chromosomal","Integer","","Recommended","","Flagged for Genetic Syndrome/ Chromosomal abnormality","0;1","0=No flag; 1=Flag","" -"dxsmrysubmitted","Integer","","Recommended","","Data submitted to coordinating center","0;1","0=False=Not submitted; 1=True=Submitted","" -"flag_other_psych","Integer","","Recommended","","Flagged for Other significant PSYCHIATRIC history","0;1","0=No flag; 1=Flag","" -"flag_other_medical","Integer","","Recommended","","Flagged for Other significant MEDICAL history","0;1","0=No flag; 1=Flag","" -"flag_other_desc","String","100","Recommended","","Flagged for Other","","","flagotherdescr" -"othergeneticstudy","Integer","","Recommended","","If participated in another genetic study","0;1;9","0=No; 1=Yes; 9=Unknown","" -"othergeneticstudydescr","String","75","Recommended","","Name of other genetic study","","","" -"subsiteid","String","20","Recommended","","Subsite ID","","","" -"evaluated","Integer","","Recommended","","Subject evaluated (Y/N)","0;1","0=No; 1=Yes","" -"evaldate","Date","","Recommended","","Evaluation date","","","" -"multibirthid","Integer","","Recommended","","Code for multiple birth","0::2","0=No; 1=Twin; 2=Multiple (>twin)","" -"tourettes_disorder","Integer","","Recommended","","DSM-IV-tr Tourette's disorder","0;1;9","0=Unaffected; 1=Definite; 9=Unratable","" -"sample","Integer","","Recommended","","Training or randomized case","1::5","1 = randomized; 2 = training; 3=randomized-control; 4=randomized-intervention; 5=concurrent cohort-intervention","" -"race_other","String","100","Recommended","","Race of Respondent Specify","","","" -"respond","Integer","","Recommended","","Respondent","1::7;999","1 = Parent; 2 = Teacher; 3=Self; 4= Other; 5= Significant other; 6 = Parent 1; 7 = Parent 2; 999 = Not available","form_ext" -"date_confirmed_phenotype","Date","","Recommended","","Date when subject was diagnosed","","","" -"pos_years","Integer","","Recommended","","Number of years at position","0::100;-9;999","-9 = Unknown/Not Reported; 999 = N/A","" -"position1","String","150","Recommended","","Title of Employment Position","","-9 = Unknown/Not Reported","" -"timepoint_label","String","50","Recommended","","Timepoint/visit label","","","" -"trt_grp_desc","String","2000","Recommended","","Treatment Group Assignment - Description","","-9 = Unknown/Not Reported","" -"longform_id","String","50","Recommended","","Long form of Subject ID","","","" -"src_sibling6_id","String","100","Recommended","","site specific sibling6 ID","","","" -"sibling_type6","String","255","Recommended","","sibling type","Full Brother FB; Half Mother Brother HMB; Half Father Brother HFB; Full Sister FS; Half Mother Sister HMS; Half Father Sister HFS; Adopted Brother AB; Adopted Sister AS; Unknown","","" -"subjectkey_sibling7","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for subject's sibling","NDAR*","","" -"src_sibling7_id","String","100","Recommended","","site specific sibling7 ID","","","" -"sibling_type7","String","255","Recommended","","sibling type","Full Brother FB; Half Mother Brother HMB; Half Father Brother HFB; Full Sister FS; Half Mother Sister HMS; Half Father Sister HFS; Adopted Brother AB; Adopted Sister AS; Unknown","","" -"subjectkey_sibling8","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for subject's sibling","NDAR*","","" -"src_sibling8_id","String","100","Recommended","","site specific sibling8 ID","","","" -"sibling_type8","String","255","Recommended","","sibling type","Full Brother FB; Half Mother Brother HMB; Half Father Brother HFB; Full Sister FS; Half Mother Sister HMS; Half Father Sister HFS; Adopted Brother AB; Adopted Sister AS; Unknown","","" -"subjectkey_sibling9","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for subject's sibling","NDAR*","","" -"src_sibling9_id","String","100","Recommended","","site specific sibling9 ID","","","" -"sibling_type9","String","255","Recommended","","sibling type","Full Brother FB; Half Mother Brother HMB; Half Father Brother HFB; Full Sister FS; Half Mother Sister HMS; Half Father Sister HFS; Adopted Brother AB; Adopted Sister AS; Unknown","","" -"subjectkey_sibling10","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for subject's sibling","NDAR*","","" -"src_sibling10_id","String","100","Recommended","","site specific sibling10 ID","","","" -"sibling_type10","String","255","Recommended","","sibling type","Full Brother FB; Half Mother Brother HMB; Half Father Brother HFB; Full Sister FS; Half Mother Sister HMS; Half Father Sister HFS; Adopted Brother AB; Adopted Sister AS; Unknown","","" -"subjectkey_sibling5","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for subject's sibling","NDAR*","","" -"src_sibling5_id","String","100","Recommended","","site specific sibling5 ID","","","" -"sibling_type5","String","255","Recommended","","sibling type","Full Brother FB; Half Mother Brother HMB; Half Father Brother HFB; Full Sister FS; Half Mother Sister HMS; Half Father Sister HFS; Adopted Brother AB; Adopted Sister AS; Unknown","Full Brother FB; Half Mother Brother HMB; Half Father Brother HFB; Full Sister FS; Half Mother Sister HMS; Half Father Sister HFS; Adopted Brother AB; Adopted Sister AS; Unknown","" -"subjectkey_sibling6","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for subject's sibling","NDAR*","","" -"subjectkey_femalecaregiver","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for non-biological mother or female caregiver","","","" -"subjectkey_malecaregiver","GUID","","Recommended","","The NDAR Global Unique Identifier (GUID) for non-biological father or male caregiver","","","" -"src_femalecaregiver_id","String","20","Recommended","","Subject ID for non-biological mother or female caregiver how it is defined in lab/project","","","" -"src_malecaregiver_id","String","20","Recommended","","Subject ID for non-biological father or male caregiver how it is defined in lab/project","","","" -"ref_child_id","String","50","Recommended","","Referencing Child ID how it is defined in lab/project","","","" -"child_subjectkey","GUID","","Recommended","","Original GUID","","","" -"screen_randomization","Integer","","Recommended","","Screening group assignment","0;1","0 = Experimental (pediatric practice randomized to early screening group); 1 = Usual Care (pediatric practice randomized to usual care)","" -"fetal_age","Integer","","Recommended","","Age of the fetus (i.e., gestational age) in days","0::322","","" -"fetal_age_type","Integer","","Recommended","","Type of gestational age used for fetal_age","1;2","1 = Postovulatory gestational age, defined as days since the last ovulation, expected term of 266 days; 2 = Postmenstrual gestational age, days since the last menstrual period, expected term of 280 days","" -"studyphase","Integer","","Recommended","","Study Phase","1::6; -888; -999","1=Phase 1: Treatment as Usual(TAU); 2=Phase 2: Screening Only; 3=Phase 3: Intervention; 4=Focus Groups; 5=Open Trial; 6=Randomized Trial; -888=Not Applicable; -999=Missing;","" -"gender_identity","Integer","","Recommended","","Gender identity: Do you identify as:","1::12","1 = Female; 2 = Male; 3 = Other; 4 = Agender; 5 = Nonbinary/Fluid; 6 = Transgender female; 7 = Transgender male; 8 = Genderqueer; 9 = Do not wish to report; 10 = Multiple Identities Listed; 11 = Non-binary; 12 = Genderfluid","" -"demo_sex_tgender","Integer","","Recommended","","Transgender","0;1;2","0=No;1=Yes;2=Maybe","" -"teen_subject_id","String","20","Recommended","","Teen subject ID the parent is reporting on","","","" -"trtarm","String","200","Recommended","","Treatment arm","","","" -"custom_src_id","String","30","Recommended","","Subject ID how it's defined in lab/project (used for source IDs that change depending on timepoint/visit/etc.)","","","" -"pin_id","String","6","Recommended","","PIN ID","","","" diff --git a/nda_cde/ndar_subject01_template.csv b/nda_cde/ndar_subject01_template.csv deleted file mode 100644 index 1599bb9..0000000 --- a/nda_cde/ndar_subject01_template.csv +++ /dev/null @@ -1,2 +0,0 @@ -"ndar_subject","01" -"subjectkey","src_subject_id","interview_date","interview_age","sex","race","ethnic_group","phenotype","phenotype_description","twins_study","sibling_study","family_study","family_user_def_id","subjectkey_mother","src_mother_id","subjectkey_father","src_father_id","subjectkey_sibling1","src_sibling1_id","sibling_type1","subjectkey_sibling2","src_sibling2_id","sibling_type2","subjectkey_sibling3","src_sibling3_id","sibling_type3","subjectkey_sibling4","src_sibling4_id","sibling_type4","zygosity","sample_taken","sample_id_original","sample_description","biorepository_name","sample_id_biorepository","patient_id_biorepository","cell_id_original","cell_id_biorepository","agre_subject_id","sfari_subject_id","cpea_site","cpea_id","blood_id","adi_dx","ados_dx","agp_family_id","agp_subject_id","site","comments_misc","week","study","reg_edu","reg_mother_edu","ca243","ccc2english","primary_language","physiological_responses_type","reg_father_edu","employ_status","bkgrnd_med","demo_logfinc","demo_wt_n_nr","demo_stratum","grade","service_specialed","asisped","brain_injury","trt_grp","version_form","visit","reason_nint","reason_nint_other","liv_sit","height_met","weight_met","bmi","q013","medchng","capacity","blood_1","blood_2","country","country_origin","demo_6","year_mta","chronic_ticdisorder_motor","chronic_ticdisorder_vocal","chronicticdisorder_combined","provisional_ticdisorder","transient_ticdisorder","tic_disorder_nos","p53i3","ticsxcur","ticdxoverride","ocddiagnoisid","ocddiagnois","hxocdage","ocsxcur","ocdxoverride","trichid","trichage","trichsxcur","adhd_combined","adhd_predom_inattent","adhd_predom_hyperimpul","grantnum","adhd_subclinical","ksads_adhd_age","adhdsxcur","adhddxoverride","flag_atypical","flag_psychosis","flag_pdd_asd","flag_other_neurolog","flag_congenital_anom","flag_genetic_chromosomal","dxsmrysubmitted","flag_other_psych","flag_other_medical","flag_other_desc","othergeneticstudy","othergeneticstudydescr","subsiteid","evaluated","evaldate","multibirthid","tourettes_disorder","sample","race_other","respond","date_confirmed_phenotype","pos_years","position1","timepoint_label","trt_grp_desc","longform_id","src_sibling6_id","sibling_type6","subjectkey_sibling7","src_sibling7_id","sibling_type7","subjectkey_sibling8","src_sibling8_id","sibling_type8","subjectkey_sibling9","src_sibling9_id","sibling_type9","subjectkey_sibling10","src_sibling10_id","sibling_type10","subjectkey_sibling5","src_sibling5_id","sibling_type5","subjectkey_sibling6","subjectkey_femalecaregiver","subjectkey_malecaregiver","src_femalecaregiver_id","src_malecaregiver_id","ref_child_id","child_subjectkey","screen_randomization","fetal_age","fetal_age_type","studyphase","gender_identity","demo_sex_tgender","teen_subject_id","trtarm","custom_src_id","pin_id" diff --git a/selected_activities.json b/selected_activities.json deleted file mode 100644 index d66b0aa..0000000 --- a/selected_activities.json +++ /dev/null @@ -1 +0,0 @@ -["voiceActivity"] \ No newline at end of file