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bumping parsing versions for binds refactor parsers
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EvanDietzMorris committed Jul 19, 2024
1 parent 766c5b7 commit 734cc6e
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Showing 4 changed files with 4 additions and 4 deletions.
2 changes: 1 addition & 1 deletion parsers/BINDING/src/loadBINDINGDB.py
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Expand Up @@ -52,7 +52,7 @@ class BINDINGDBLoader(SourceDataLoader):
source_data_url = "https://www.bindingdb.org/rwd/bind/chemsearch/marvin/SDFdownload.jsp?all_download=yes"
license = "All data and download files in bindingDB are freely available under a 'Creative Commons BY 3.0' license.'"
attribution = 'https://www.bindingdb.org/rwd/bind/info.jsp'
parsing_version = '1.5'
parsing_version = '1.6'

def __init__(self, test_mode: bool = False, source_data_dir: str = None):
"""
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2 changes: 1 addition & 1 deletion parsers/PHAROS/src/loadPHAROS.py
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Expand Up @@ -19,7 +19,7 @@ class PHAROSLoader(SourceDataLoader):
source_data_url = "https://pharos.nih.gov/"
license = "Data accessed from Pharos and TCRD is publicly available from the primary sources listed above. Please respect their individual licenses regarding proper use and redistribution."
attribution = 'Sheils, T., Mathias, S. et al, "TCRD and Pharos 2021: mining the human proteome for disease biology", Nucl. Acids Res., 2021. DOI: 10.1093/nar/gkaa993'
parsing_version: str = '1.6'
parsing_version: str = '1.7'

GENE_TO_DISEASE_QUERY: str = """select distinct x.value, d.did, d.name, p.sym, d.dtype, d.score
from disease d
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2 changes: 1 addition & 1 deletion parsers/drugcentral/src/loaddrugcentral.py
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Expand Up @@ -22,7 +22,7 @@ class DrugCentralLoader(SourceDataLoader):
source_data_url = "https://drugcentral.org/download"
license = "https://drugcentral.org/privacy"
attribution = "https://drugcentral.org/about"
parsing_version: str = '1.4'
parsing_version: str = '1.5'

omop_relationmap = {'off-label use': 'RO:0002606', # is substance that treats
'reduce risk': 'RO:0002606', # is substance that treats
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2 changes: 1 addition & 1 deletion parsers/gtopdb/src/loadGtoPdb.py
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Expand Up @@ -57,7 +57,7 @@ class GtoPdbLoader(SourceDataLoader):
source_data_url = "http://www.guidetopharmacology.org/"
license = "https://www.guidetopharmacology.org/about.jsp#license"
attribution = "https://www.guidetopharmacology.org/citing.jsp"
parsing_version: str = '1.3'
parsing_version: str = '1.4'

def __init__(self, test_mode: bool = False, source_data_dir: str = None):
"""
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