Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Handle node and edge properties to ensure biolink compliance #273

Open
eKathleenCarter opened this issue Dec 11, 2024 · 0 comments
Open
Assignees
Labels
Biological Context QC Require validation of biological context to ensure accuracy and consistency

Comments

@eKathleenCarter
Copy link
Contributor

these properties are on our edges:
"edge_properties": [
"Homology",
"affinityParameter",
"Combined_score",
"knowledge_level",
"Cooccurance",
"biolink:tmkp_confidence_score",
"ligand",
"stage_qualifier",
"predicate",
"subject",
"p_value",
"qualified_predicate",
"Coexpression",
"Textmining_transferred",
"protein",
"slope",
"frequency_qualifier",
"expressed_in",
"Database",
"sex_qualifier",
"Textmining",
"publications",
"Fusion",
"primaryTarget",
"pubchem_assay_ids",
"FAERS_llr",
"detection_method",
"sentences",
"onset_qualifier",
"affinity_parameter",
"description",
"supporting_affinities",
"Coexpression_transferred",
"tmkp_ids",
"object",
"agent_type",
"NCBITaxon",
"affinity",
"patent_ids",
"aggregator_knowledge_source",
"object_direction_qualifier",
"score",
"Experiments_transferred",
"primary_knowledge_source",
"Experiments",
"Database_transferred",
"drugmechdb_path_id",
"hetio_source",
"complex_context",
"endogenous",
"object_aspect_qualifier",
"species_context_qualifier"
]

they should be biolink compliant
@eKathleenCarter eKathleenCarter self-assigned this Dec 11, 2024
@github-actions github-actions bot added the Biological Context QC Require validation of biological context to ensure accuracy and consistency label Dec 11, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Biological Context QC Require validation of biological context to ensure accuracy and consistency
Projects
None yet
Development

No branches or pull requests

1 participant