diff --git a/docs/data/writeThisMultipleXLSX.xlsx b/docs/data/writeThisMultipleXLSX.xlsx index 0aa1773..5615480 100644 Binary files a/docs/data/writeThisMultipleXLSX.xlsx and b/docs/data/writeThisMultipleXLSX.xlsx differ diff --git a/docs/data/writeThisXLSX.xlsx b/docs/data/writeThisXLSX.xlsx index 1284bde..afda79d 100644 Binary files a/docs/data/writeThisXLSX.xlsx and b/docs/data/writeThisXLSX.xlsx differ diff --git a/docs/presentations/r_code/introToR_Session2.R b/docs/presentations/r_code/introToR_Session2.R index 6f5965f..d43e68b 100644 --- a/docs/presentations/r_code/introToR_Session2.R +++ b/docs/presentations/r_code/introToR_Session2.R @@ -6,6 +6,16 @@ suppressPackageStartupMessages(require(knitr)) knitr::opts_chunk$set(echo = TRUE, tidy = T) +## ----xaringan-themer, include=FALSE, warning=FALSE---------------------------- +library(xaringanthemer) +style_mono_accent( + base_color = "#23373B", + header_font_google = google_font("Montserrat"), + text_font_google = google_font("Fira Sans", "300", "300i"), + code_font_google = google_font("Fira Code") +) + + ## ----results='asis',include=TRUE,echo=FALSE----------------------------------- if(params$isSlides != "yes"){ cat("# Introduction to R (part 2) diff --git a/docs/presentations/singlepage/introToR_Session1.html b/docs/presentations/singlepage/introToR_Session1.html index ad7ef69..0788f65 100644 --- a/docs/presentations/singlepage/introToR_Session1.html +++ b/docs/presentations/singlepage/introToR_Session1.html @@ -9,7 +9,10 @@ - + + + + Introduction to R, Session 1 @@ -1556,9 +1559,10 @@

Introduction to R, Session 1

-

Rockefeller University, Bioinformatics Resource -Center

-

http://rockefelleruniversity.github.io/Intro_To_R_1Day/

+

Rockefeller University

+

Bioinformatics Resource Center

+

http://rockefelleruniversity.github.io/Intro_To_R_1Day/

+

brc@rockefeller.edu

@@ -3004,13 +3008,13 @@

Data from external sources

Gene_a -3.131664 +3.439713 -4.037782 +3.282817 -4.794836 +2.029076 @@ -3018,13 +3022,13 @@

Data from external sources

Gene_b -4.485000 +5.183143 -1.574353 +4.045740 -3.796876 +3.695944 @@ -3032,13 +3036,13 @@

Data from external sources

Gene_c -4.247558 +2.869225 -2.222445 +4.664638 -6.111919 +2.539172 @@ -3046,13 +3050,13 @@

Data from external sources

Gene_d -2.981276 +4.693789 -4.555480 +4.356273 -4.123341 +5.969694 @@ -3060,13 +3064,13 @@

Data from external sources

Gene_e -9.667122 +10.277959 -11.034829 +9.973955 -10.846463 +11.179049 @@ -3074,13 +3078,13 @@

Data from external sources

Gene_f -11.046485 +9.782953 -10.704920 +10.862418 -10.113150 +10.499444 @@ -3088,13 +3092,13 @@

Data from external sources

Gene_g -8.596922 +10.777056 -10.337665 +8.521394 -11.694577 +10.486373 @@ -3102,13 +3106,13 @@

Data from external sources

Gene_h -9.918383 +11.717774 -11.110133 +10.323903 -11.051736 +11.212961 diff --git a/docs/presentations/singlepage/introToR_Session2.html b/docs/presentations/singlepage/introToR_Session2.html index d6070f2..d92539c 100644 --- a/docs/presentations/singlepage/introToR_Session2.html +++ b/docs/presentations/singlepage/introToR_Session2.html @@ -9,10 +9,13 @@ - + + + + -Introduction to R, Session 2 ¶ ¶ ¶ ¶ +Introduction to R, Session 2 @@ -15,11 +18,17 @@ # Introduction to R, Session 1 ] .author[ -### Rockefeller University, Bioinformatics Resource Center +### Rockefeller University ] -.date[ +.author[ +### Bioinformatics Resource Center +] +.author[ ### http://rockefelleruniversity.github.io/Intro_To_R_1Day/ ] +.author[ +### brc@rockefeller.edu +] --- @@ -2557,51 +2566,51 @@ <tbody> <tr> <td style="text-align:left;"> Gene_a </td> - <td style="text-align:right;"> 3.071682 </td> - <td style="text-align:right;"> 4.659947 </td> - <td style="text-align:right;"> 6.657631 </td> + <td style="text-align:right;"> 4.261637 </td> + <td style="text-align:right;"> 3.300825 </td> + <td style="text-align:right;"> 3.946601 </td> </tr> <tr> <td style="text-align:left;"> Gene_b </td> - <td style="text-align:right;"> 4.386384 </td> - <td style="text-align:right;"> 2.508203 </td> - <td style="text-align:right;"> 4.048541 </td> + <td style="text-align:right;"> 4.410959 </td> + <td style="text-align:right;"> 3.596112 </td> + <td style="text-align:right;"> 5.517069 </td> </tr> <tr> <td style="text-align:left;"> Gene_c </td> - <td style="text-align:right;"> 2.613734 </td> - <td style="text-align:right;"> 3.306210 </td> - <td style="text-align:right;"> 2.390803 </td> + <td style="text-align:right;"> 4.629722 </td> + <td style="text-align:right;"> 4.858954 </td> + <td style="text-align:right;"> 3.826554 </td> </tr> <tr> <td style="text-align:left;"> Gene_d </td> - <td style="text-align:right;"> 6.128499 </td> - <td style="text-align:right;"> 4.726705 </td> - <td style="text-align:right;"> 4.703866 </td> + <td style="text-align:right;"> 3.994964 </td> + <td style="text-align:right;"> 4.337427 </td> + <td style="text-align:right;"> 3.488050 </td> </tr> <tr> <td style="text-align:left;"> Gene_e </td> - <td style="text-align:right;"> 13.447738 </td> - <td style="text-align:right;"> 9.166767 </td> - <td style="text-align:right;"> 8.836641 </td> + <td style="text-align:right;"> 9.761664 </td> + <td style="text-align:right;"> 11.711170 </td> + <td style="text-align:right;"> 10.553195 </td> </tr> <tr> <td style="text-align:left;"> Gene_f </td> - <td style="text-align:right;"> 9.654917 </td> - <td style="text-align:right;"> 8.884562 </td> - <td style="text-align:right;"> 11.638120 </td> + <td style="text-align:right;"> 9.778864 </td> + <td style="text-align:right;"> 9.115707 </td> + <td style="text-align:right;"> 8.200663 </td> </tr> <tr> <td style="text-align:left;"> Gene_g </td> - <td style="text-align:right;"> 9.041328 </td> - <td style="text-align:right;"> 8.981967 </td> - <td style="text-align:right;"> 8.196116 </td> + <td style="text-align:right;"> 10.734559 </td> + <td style="text-align:right;"> 7.963840 </td> + <td style="text-align:right;"> 9.347527 </td> </tr> <tr> <td style="text-align:left;"> Gene_h </td> - <td style="text-align:right;"> 9.838471 </td> - <td style="text-align:right;"> 8.516912 </td> - <td style="text-align:right;"> 9.739770 </td> + <td style="text-align:right;"> 12.230264 </td> + <td style="text-align:right;"> 10.249766 </td> + <td style="text-align:right;"> 10.202094 </td> </tr> </tbody> </table> diff --git a/docs/presentations/slides/introToR_Session2.html b/docs/presentations/slides/introToR_Session2.html index cf98801..b9027ef 100644 --- a/docs/presentations/slides/introToR_Session2.html +++ b/docs/presentations/slides/introToR_Session2.html @@ -1,9 +1,12 @@ - Introduction to R, Session 2 ¶ ¶ ¶ ¶ + Introduction to R, Session 2 - + + + + @@ -13,14 +16,20 @@ class: center, middle, inverse, title-slide .title[ -# Introduction to R, Session 2 ¶ ¶ ¶
¶ +# Introduction to R, Session 2 ] .author[ -### Rockefeller University, Bioinformatics Resource Centre +### Rockefeller University ] -.date[ +.author[ +### Bioinformatics Resource Center +] +.author[ ### http://rockefelleruniversity.github.io/Intro_To_R_1Day/ ] +.author[ +### brc@rockefeller.edu +] --- @@ -28,6 +37,9 @@ + + + ## Overview - [Recap](https://rockefelleruniversity.github.io/Intro_To_R_1Day/presentations/singlepage/introToR_Session2.html#recap) @@ -35,7 +47,6 @@ - [Libraries](https://rockefelleruniversity.github.io/Intro_To_R_1Day/presentations/singlepage/introToR_Session2.html#getting_additional_libraries) - [Writing scripts](https://rockefelleruniversity.github.io/Intro_To_R_1Day/presentations/singlepage/introToR_Session2.html#scripts) - --- # Recap @@ -1383,11 +1394,11 @@ ``` ``` -## Mean is -0.0627277797586562 +## Mean is 0.0213025802018711 ``` ``` -## [1] -1.020135 +## [1] 2.506417 ``` --- @@ -1412,10 +1423,10 @@ ``` ``` -## [1] -1.020135211 0.689039144 1.397614340 1.133187351 -0.047210682 -## [6] -0.774963662 -0.212378223 0.293323536 0.335930822 -0.121927675 -## [11] -0.732105610 1.982461059 0.003340094 -0.261287075 1.585759929 -## [16] -0.462930780 -0.737624689 -1.526526034 -1.783326660 0.259760024 +## [1] 2.5064166 0.3384537 -1.5639004 -0.4367883 -0.1023052 -0.2479230 +## [7] 0.8048726 0.3938762 -0.4739163 -0.1021068 -0.9742132 1.6428937 +## [13] 0.1696986 -1.3119838 -0.1666072 -1.6856568 0.2129831 0.1369554 +## [19] 0.7089834 0.1502676 ``` diff --git a/r_course/data/writeThisMultipleXLSX.xlsx b/r_course/data/writeThisMultipleXLSX.xlsx index 0aa1773..5615480 100644 Binary files a/r_course/data/writeThisMultipleXLSX.xlsx and b/r_course/data/writeThisMultipleXLSX.xlsx differ diff --git a/r_course/data/writeThisXLSX.xlsx b/r_course/data/writeThisXLSX.xlsx index 1284bde..afda79d 100644 Binary files a/r_course/data/writeThisXLSX.xlsx and b/r_course/data/writeThisXLSX.xlsx differ diff --git a/r_course/presentations/r_code/introToR_Session2.R b/r_course/presentations/r_code/introToR_Session2.R index 6f5965f..d43e68b 100644 --- a/r_course/presentations/r_code/introToR_Session2.R +++ b/r_course/presentations/r_code/introToR_Session2.R @@ -6,6 +6,16 @@ suppressPackageStartupMessages(require(knitr)) knitr::opts_chunk$set(echo = TRUE, tidy = T) +## ----xaringan-themer, include=FALSE, warning=FALSE---------------------------- +library(xaringanthemer) +style_mono_accent( + base_color = "#23373B", + header_font_google = google_font("Montserrat"), + text_font_google = google_font("Fira Sans", "300", "300i"), + code_font_google = google_font("Fira Code") +) + + ## ----results='asis',include=TRUE,echo=FALSE----------------------------------- if(params$isSlides != "yes"){ cat("# Introduction to R (part 2) diff --git a/r_course/presentations/singlepage/introToR_Session1.html b/r_course/presentations/singlepage/introToR_Session1.html index ad7ef69..0788f65 100644 --- a/r_course/presentations/singlepage/introToR_Session1.html +++ b/r_course/presentations/singlepage/introToR_Session1.html @@ -9,7 +9,10 @@ - + + + + Introduction to R, Session 1 @@ -1556,9 +1559,10 @@

Introduction to R, Session 1

-

Rockefeller University, Bioinformatics Resource -Center

-

http://rockefelleruniversity.github.io/Intro_To_R_1Day/

+

Rockefeller University

+

Bioinformatics Resource Center

+

http://rockefelleruniversity.github.io/Intro_To_R_1Day/

+

brc@rockefeller.edu

@@ -3004,13 +3008,13 @@

Data from external sources

Gene_a -3.131664 +3.439713 -4.037782 +3.282817 -4.794836 +2.029076 @@ -3018,13 +3022,13 @@

Data from external sources

Gene_b -4.485000 +5.183143 -1.574353 +4.045740 -3.796876 +3.695944 @@ -3032,13 +3036,13 @@

Data from external sources

Gene_c -4.247558 +2.869225 -2.222445 +4.664638 -6.111919 +2.539172 @@ -3046,13 +3050,13 @@

Data from external sources

Gene_d -2.981276 +4.693789 -4.555480 +4.356273 -4.123341 +5.969694 @@ -3060,13 +3064,13 @@

Data from external sources

Gene_e -9.667122 +10.277959 -11.034829 +9.973955 -10.846463 +11.179049 @@ -3074,13 +3078,13 @@

Data from external sources

Gene_f -11.046485 +9.782953 -10.704920 +10.862418 -10.113150 +10.499444 @@ -3088,13 +3092,13 @@

Data from external sources

Gene_g -8.596922 +10.777056 -10.337665 +8.521394 -11.694577 +10.486373 @@ -3102,13 +3106,13 @@

Data from external sources

Gene_h -9.918383 +11.717774 -11.110133 +10.323903 -11.051736 +11.212961 diff --git a/r_course/presentations/singlepage/introToR_Session2.html b/r_course/presentations/singlepage/introToR_Session2.html index d6070f2..d92539c 100644 --- a/r_course/presentations/singlepage/introToR_Session2.html +++ b/r_course/presentations/singlepage/introToR_Session2.html @@ -9,10 +9,13 @@ - + + + + -Introduction to R, Session 2 ¶ ¶ ¶ ¶ +Introduction to R, Session 2 @@ -15,11 +18,17 @@ # Introduction to R, Session 1 ] .author[ -### Rockefeller University, Bioinformatics Resource Center +### Rockefeller University ] -.date[ +.author[ +### Bioinformatics Resource Center +] +.author[ ### http://rockefelleruniversity.github.io/Intro_To_R_1Day/ ] +.author[ +### brc@rockefeller.edu +] --- @@ -2557,51 +2566,51 @@ <tbody> <tr> <td style="text-align:left;"> Gene_a </td> - <td style="text-align:right;"> 3.071682 </td> - <td style="text-align:right;"> 4.659947 </td> - <td style="text-align:right;"> 6.657631 </td> + <td style="text-align:right;"> 4.261637 </td> + <td style="text-align:right;"> 3.300825 </td> + <td style="text-align:right;"> 3.946601 </td> </tr> <tr> <td style="text-align:left;"> Gene_b </td> - <td style="text-align:right;"> 4.386384 </td> - <td style="text-align:right;"> 2.508203 </td> - <td style="text-align:right;"> 4.048541 </td> + <td style="text-align:right;"> 4.410959 </td> + <td style="text-align:right;"> 3.596112 </td> + <td style="text-align:right;"> 5.517069 </td> </tr> <tr> <td style="text-align:left;"> Gene_c </td> - <td style="text-align:right;"> 2.613734 </td> - <td style="text-align:right;"> 3.306210 </td> - <td style="text-align:right;"> 2.390803 </td> + <td style="text-align:right;"> 4.629722 </td> + <td style="text-align:right;"> 4.858954 </td> + <td style="text-align:right;"> 3.826554 </td> </tr> <tr> <td style="text-align:left;"> Gene_d </td> - <td style="text-align:right;"> 6.128499 </td> - <td style="text-align:right;"> 4.726705 </td> - <td style="text-align:right;"> 4.703866 </td> + <td style="text-align:right;"> 3.994964 </td> + <td style="text-align:right;"> 4.337427 </td> + <td style="text-align:right;"> 3.488050 </td> </tr> <tr> <td style="text-align:left;"> Gene_e </td> - <td style="text-align:right;"> 13.447738 </td> - <td style="text-align:right;"> 9.166767 </td> - <td style="text-align:right;"> 8.836641 </td> + <td style="text-align:right;"> 9.761664 </td> + <td style="text-align:right;"> 11.711170 </td> + <td style="text-align:right;"> 10.553195 </td> </tr> <tr> <td style="text-align:left;"> Gene_f </td> - <td style="text-align:right;"> 9.654917 </td> - <td style="text-align:right;"> 8.884562 </td> - <td style="text-align:right;"> 11.638120 </td> + <td style="text-align:right;"> 9.778864 </td> + <td style="text-align:right;"> 9.115707 </td> + <td style="text-align:right;"> 8.200663 </td> </tr> <tr> <td style="text-align:left;"> Gene_g </td> - <td style="text-align:right;"> 9.041328 </td> - <td style="text-align:right;"> 8.981967 </td> - <td style="text-align:right;"> 8.196116 </td> + <td style="text-align:right;"> 10.734559 </td> + <td style="text-align:right;"> 7.963840 </td> + <td style="text-align:right;"> 9.347527 </td> </tr> <tr> <td style="text-align:left;"> Gene_h </td> - <td style="text-align:right;"> 9.838471 </td> - <td style="text-align:right;"> 8.516912 </td> - <td style="text-align:right;"> 9.739770 </td> + <td style="text-align:right;"> 12.230264 </td> + <td style="text-align:right;"> 10.249766 </td> + <td style="text-align:right;"> 10.202094 </td> </tr> </tbody> </table> diff --git a/r_course/presentations/slides/introToR_Session2.html b/r_course/presentations/slides/introToR_Session2.html index cf98801..b9027ef 100644 --- a/r_course/presentations/slides/introToR_Session2.html +++ b/r_course/presentations/slides/introToR_Session2.html @@ -1,9 +1,12 @@ - Introduction to R, Session 2 ¶ ¶ ¶ ¶ + Introduction to R, Session 2 - + + + + @@ -13,14 +16,20 @@ class: center, middle, inverse, title-slide .title[ -# Introduction to R, Session 2 ¶ ¶ ¶
¶ +# Introduction to R, Session 2 ] .author[ -### Rockefeller University, Bioinformatics Resource Centre +### Rockefeller University ] -.date[ +.author[ +### Bioinformatics Resource Center +] +.author[ ### http://rockefelleruniversity.github.io/Intro_To_R_1Day/ ] +.author[ +### brc@rockefeller.edu +] --- @@ -28,6 +37,9 @@ + + + ## Overview - [Recap](https://rockefelleruniversity.github.io/Intro_To_R_1Day/presentations/singlepage/introToR_Session2.html#recap) @@ -35,7 +47,6 @@ - [Libraries](https://rockefelleruniversity.github.io/Intro_To_R_1Day/presentations/singlepage/introToR_Session2.html#getting_additional_libraries) - [Writing scripts](https://rockefelleruniversity.github.io/Intro_To_R_1Day/presentations/singlepage/introToR_Session2.html#scripts) - --- # Recap @@ -1383,11 +1394,11 @@ ``` ``` -## Mean is -0.0627277797586562 +## Mean is 0.0213025802018711 ``` ``` -## [1] -1.020135 +## [1] 2.506417 ``` --- @@ -1412,10 +1423,10 @@ ``` ``` -## [1] -1.020135211 0.689039144 1.397614340 1.133187351 -0.047210682 -## [6] -0.774963662 -0.212378223 0.293323536 0.335930822 -0.121927675 -## [11] -0.732105610 1.982461059 0.003340094 -0.261287075 1.585759929 -## [16] -0.462930780 -0.737624689 -1.526526034 -1.783326660 0.259760024 +## [1] 2.5064166 0.3384537 -1.5639004 -0.4367883 -0.1023052 -0.2479230 +## [7] 0.8048726 0.3938762 -0.4739163 -0.1021068 -0.9742132 1.6428937 +## [13] 0.1696986 -1.3119838 -0.1666072 -1.6856568 0.2129831 0.1369554 +## [19] 0.7089834 0.1502676 ```