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pom.xml
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pom.xml
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<?xml version="1.0" encoding="utf-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>edu.stanford.epad</groupId>
<artifactId>epad-project</artifactId>
<version>1.1</version>
<relativePath>../isis-epad-project/pom.xml</relativePath>
</parent>
<artifactId>epad-ws</artifactId>
<packaging>war</packaging>
<name>ePAD Web Services</name>
<properties>
<timestamp>${maven.build.timestamp}</timestamp>
<epadws.version>3.3</epadws.version>
<maven.build.timestamp.format>yyyy-MM-dd HH:mm</maven.build.timestamp.format>
<hostname>${env.HOSTNAME}${env.COMPUTERNAME}</hostname>
</properties>
<dependencies>
<!-- See manifest additions below for default and vendor specification and implemention entries -->
<dependency>
<groupId>com.sun.media</groupId>
<artifactId>jai_imageio</artifactId>
<version>${jai.imageio.version}</version>
</dependency>
<dependency>
<groupId>edu.stanford.epad</groupId>
<artifactId>epad-common</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>edu.stanford.epad</groupId>
<artifactId>epad-dto</artifactId>
<version>${project.version}</version>
</dependency>
<!-- <dependency>
<groupId>edu.stanford.epad.plugins</groupId>
<artifactId>vanderbilt</artifactId>
<version>${vanderbilt.plugin.version}</version>
</dependency> -->
<dependency>
<groupId>edu.stanford.epad.epadws</groupId>
<artifactId>dicomrt</artifactId>
<version>${matlab.release.number.jjvector}</version>
</dependency>
<dependency>
<groupId>com.matlab</groupId>
<artifactId>javabuilder</artifactId>
<version>${matlab.release.number.jjvector}</version>
</dependency>
<!-- >dependency>
<groupId>edu.stanford.hakan.aim3api</groupId>
<artifactId>aim3api</artifactId>
<version>${aim3api.version}</version>
</dependency -->
<!-- https://mvnrepository.com/artifact/xmlwise/xmlwise -->
<dependency>
<groupId>xmlwise</groupId>
<artifactId>xmlwise</artifactId>
<version>1.2.11</version>
</dependency>
<dependency>
<groupId>edu.stanford.hakan.aim4api</groupId>
<artifactId>aimapi</artifactId>
<version>${aimapi.version}</version>
</dependency>
<!-- This is in the parent project repository because we could not find a public Maven repository containing it. -->
<dependency>
<groupId>com.pixelmed</groupId>
<artifactId>pixelmed</artifactId>
<version>${pixelmed.version}</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>${servlet.api.version}</version>
</dependency>
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-core</artifactId>
<version>1.19</version>
</dependency>
<dependency>
<groupId>com.google.code.gson</groupId>
<artifactId>gson</artifactId>
<version>${gson.version}</version>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>${mysql.connector.version}</version>
<scope>runtime</scope>
</dependency>
<!-- Start of DCM4CHEE dependencies -->
<dependency>
<groupId>dcm4che</groupId>
<artifactId>dcm4che-core</artifactId>
<version>${dcm4chee.version}</version>
</dependency>
<dependency>
<groupId>dcm4che</groupId>
<artifactId>dcm4che-net</artifactId>
<version>${dcm4chee.version}</version>
</dependency>
<dependency>
<groupId>dcm4che</groupId>
<artifactId>dcm4che-imageio</artifactId>
<version>${dcm4chee.version}</version>
</dependency>
<!-- End of DCM4CHEE dependencies -->
<!-- Start of Spring dependencies -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<version>4.1.5.RELEASE</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>4.1.5.RELEASE</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
<version>4.1.5.RELEASE</version>
</dependency>
<!-- Start of Commons dependencies -->
<dependency>
<groupId>commons-fileupload</groupId>
<artifactId>commons-fileupload</artifactId>
<version>${commons.fileupload.version}</version>
</dependency>
<dependency>
<groupId>commons-cli</groupId>
<artifactId>commons-cli</artifactId>
<version>${commons.cli.version}</version>
</dependency>
<dependency>
<groupId>commons-httpclient</groupId>
<artifactId>commons-httpclient</artifactId>
<version>${commons.httpclient.version}</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>${commons.io.version}</version>
</dependency>
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>${commons.codec.version}</version>
</dependency>
<!-- End of Commons dependencies -->
<!-- Start of Apache dependencies -->
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
<version>${apache.httpclient.version}</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpcore</artifactId>
<version>${apache.httpcore.version}</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpmime</artifactId>
<version>${apache.httpmime.version}</version>
</dependency>
<!-- End of Apache dependencies -->
<!-- Start of Eclipse/Jetty-related dependencies -->
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-http</artifactId>
<version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty.aggregate</groupId>
<artifactId>jetty-all</artifactId>
<version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
<version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-util</artifactId>
<version>${jetty.version}</version>
</dependency>
<!-- End of Eclipse/Jetty-related dependencies -->
<dependency>
<groupId>gov.nih.imagej</groupId>
<artifactId>imagej</artifactId>
<version>${imagej.version}</version>
</dependency>
<dependency>
<groupId>org.mindrot</groupId>
<artifactId>jbcrypt</artifactId>
<version>0.3m</version>
</dependency>
<dependency>
<groupId>org.json</groupId>
<artifactId>json</artifactId>
<version>20140107</version>
</dependency>
<dependency>
<groupId>org.mongodb</groupId>
<artifactId>mongo-java-driver</artifactId>
<version>2.13.0</version>
</dependency>
<dependency>
<groupId>net.sourceforge.jmatio</groupId>
<artifactId>jmatio</artifactId>
<version>1.0</version>
</dependency>
<!-- to be used when we use fancy json
<dependency>
<groupId>net.sf.saxon</groupId>
<artifactId>Saxon-HE</artifactId>
<version>9.4</version>
</dependency>
<dependency>
<groupId>org.codehaus.jettison</groupId>
<artifactId>jettison</artifactId>
<version>1.3.7</version>
</dependency>
<dependency>
<groupId>com.thoughtworks.xstream</groupId>
<artifactId>xstream</artifactId>
<version>1.4.7</version>
</dependency>
to be used when we move rest api to jersey
<dependency>
<groupId>org.glassfish.jersey.core</groupId>
<artifactId>jersey-server</artifactId>
<version>2.4.1</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.containers</groupId>
<artifactId>jersey-container-servlet-core</artifactId>
<version>2.4.1</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.media</groupId>
<artifactId>jersey-media-json-jackson</artifactId>
<version>2.4.1</version>
</dependency>
-->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.11</version>
</dependency>
</dependencies>
<profiles>
<profile>
<id>full</id>
<activation>
<activeByDefault>true</activeByDefault>
</activation>
<dependencies>
<dependency>
<groupId>edu.stanford.epad.plugins</groupId>
<artifactId>tedseg</artifactId>
<version>${tedseg.plugin.version}</version>
</dependency>
<dependency>
<groupId>edu.stanford.epad.plugins</groupId>
<artifactId>jjvector</artifactId>
<version>${jjvector.plugin.version}</version>
</dependency>
<dependency>
<groupId>edu.stanford.epad.plugins</groupId>
<artifactId>lesionseg</artifactId>
<version>${lesionseg.plugin.version}</version>
</dependency>
<dependency>
<groupId>edu.stanford.epad.plugins</groupId>
<artifactId>sampleplugin</artifactId>
<version>${sampleplugin.plugin.version}</version>
</dependency>
<dependency>
<groupId>edu.stanford.epad.plugins</groupId>
<artifactId>riesz</artifactId>
<version>${riesz.plugin.version}</version>
</dependency>
<dependency>
<groupId>edu.stanford.epad.plugins</groupId>
<artifactId>lesionseg</artifactId>
<version>${lesionseg.plugin.version}</version>
</dependency>
<dependency>
<groupId>edu.stanford.epad.plugins</groupId>
<artifactId>sampleplugin</artifactId>
<version>${sampleplugin.plugin.version}</version>
</dependency>
<dependency>
<groupId>edu.stanford.epad.plugins</groupId>
<artifactId>riesz</artifactId>
<version>${riesz.plugin.version}</version>
</dependency>
</dependencies>
</profile>
<profile>
<id>opensource</id>
<modules>
</modules>
</profile>
</profiles>
<build>
<resources>
<resource>
<directory>src/main/resources</directory>
<filtering>true</filtering>
<includes>
<include>**/*.txt</include>
</includes>
</resource>
<!-- The stuff below is needed -->
<resource>
<directory>src/main/resources</directory>
<filtering>false</filtering>
<excludes>
<exclude>**/*.txt</exclude>
</excludes>
</resource>
</resources>
<plugins>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<!-- Default and vendor specification and implemention entries for runtime jai_imageio loading -->
<archive>
<manifest>
<mainClass>edu.stanford.epad.epadws.Main</mainClass>
<addDefaultImplementationEntries>true</addDefaultImplementationEntries>
<addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
</manifest>
<manifestEntries>
<Specification-Vendor>Oracle</Specification-Vendor>
<Implementation-Vendor>Oracle</Implementation-Vendor>
</manifestEntries>
</archive>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
<executions>
<execution>
<id>make-assembly</id> <!-- this is used for inheritance merges -->
<phase>package</phase> <!-- bind to the packaging phase -->
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.mortbay.jetty</groupId>
<artifactId>jetty-maven-plugin</artifactId>
<version>${jetty.version}</version>
<configuration>
<scanIntervalSeconds>2</scanIntervalSeconds>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.18</version>
<configuration>
<skipTests>true</skipTests>
</configuration>
</plugin>
</plugins>
</build>
</project>