hupan_cmd.sh

#!/bin/bash

IFS=' '
complete -W "qualSta trim alignRead sam2bam bamSta assemble alignContig extractSeq assemSta getUnalnCtg rmRedundant pTpG geneCov geneExist subSample gFamExist bam2bed fastaSta sim getTaxClass rmCtm blastAlign simSeq splitSeq genePre mergeNovGene filterNovGene" hupan

complete -W "qualSta mergeQualSta trim alignRead sam2bam bamSta assemble alignContig extractSeq assemSta mergeAssemSta getUnalnCtg mergeUnalnCtg rmRedundant pTpG geneCov mergeGeneCov geneExist subSample gFamExist bam2bed fastaSta sim getTaxClass rmCtm blastAlign simSeq splitSeq genePre mergeNovGene filterNovGene" hupanLSF

complete -W "qualSta mergeQualSta trim alignRead sam2bam bamSta assemble alignContig extractSeq assemSta mergeAssemSta getUnalnCtg mergeUnalnCtg rmRedundant pTpG geneCov mergeGeneCov geneExist subSample gFamExist bam2bed fastaSta sim getTaxClass rmCtm blastAlign simSeq splitSeq genePre mergeNovGene filterNovGene" hupanSLURM