configure

#!/bin/sh

./cleanup

# where R_HOME is available prepend it to the path to ensure
# that we are using the version of R used to install this package
# for the R commands within this script.
if [ -d "$R_HOME/bin" ]; then
    PATH="$R_HOME/bin:$PATH"
fi

echo "library('reticulate')" > testPip.R
echo "library('rjson')" > testPip.R
echo "reticulate::py_run_string('import pip')" >> testPip.R
R --slave < testPip.R
rm testPip.R

if [ $? -eq 1 ]
then
  echo "ERROR: Missing system dependencies. Please see: https://r-docs.synapse.org/articles/systemDependencies.html"
  exit 1
fi

# exit immediately if any step fails
set -e

export PWD_FROM_R=${ALT_PWD-`pwd`}

# This code is for linking the package to the R Python client
Rscript --vanilla tools/installPythonClient.R $PWD_FROM_R

# build the .Rd files
# Note:  We want to just call 'tools/createRdFiles.R .' but it doesn't work on cygwin (Windows)
Rscript --vanilla tools/createRdFiles.R $PWD_FROM_R