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This repository has been archived by the owner on Jul 12, 2018. It is now read-only.

Add option for sequencing centre in BAM file #35

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ewels opened this issue Jun 18, 2018 · 1 comment
Closed

Add option for sequencing centre in BAM file #35

ewels opened this issue Jun 18, 2018 · 1 comment

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@ewels
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ewels commented Jun 18, 2018

Bowtie 1

Output options:
--sam-RG <text>
Add (usually of the form TAG:VAL, e.g. ID:IL7LANE2) as a field on the @rg header line. Specify --sam-RG multiple times to set multiple fields.
--sam-RG is ignored unless -S/--sam is also specified.

Bowtie2

SAM options:
--rg

Add (usually of the form TAG:VAL, e.g. SM:Pool1) as a field on the @rg header line.

e.g.:
--rg CN:nameofourgroup

@ewels
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ewels commented Jul 12, 2018

Moved to nf-core

@ewels ewels closed this as completed Jul 12, 2018
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