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We had |
Do not merge, yet, there is still some issues to figure out... |
OK, so in fact as long as a file is an output, it will be in the work directories. So I present you this final fix to our problem. The idea was to use the In order to do that I choose to reorder the items in our input/output. I think we have some other process that have an output that will be in the work directory when using I do think that we're using the now depreciated |
Finally remapping the channels before joining so we don't touch other parts of the script. So finally what we're now doing is not using bam as an output in I tested it, and it seems to be working ;-) |
Some output was not there anymore due to #579