diff --git a/CHANGELOG.md b/CHANGELOG.md index 2d20f79e54..2213381adf 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -32,6 +32,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### `Fixed` - [#720](https://github.com/SciLifeLab/Sarek/pull/720) - bamQC is now run on the recalibrated bams, and not after MarkDuplicates +- [#726](https://github.com/SciLifeLab/Sarek/pull/726) - Fix Ascat ref file input (one file can't be a set) ## [2.2.2] - 2018-12-19 diff --git a/somaticVC.nf b/somaticVC.nf index 138fe911d3..f2193345bd 100644 --- a/somaticVC.nf +++ b/somaticVC.nf @@ -640,7 +640,7 @@ process RunAscat { input: set idPatient, idSampleNormal, idSampleTumor, file(bafNormal), file(logrNormal), file(bafTumor), file(logrTumor) from convertAlleleCountsOutput - set file(acLociGC) from Channel.value([referenceMap.acLociGC]) + file(acLociGC) from Channel.value([referenceMap.acLociGC]) output: set val("ascat"), idPatient, idSampleNormal, idSampleTumor, file("${idSampleTumor}.*.{png,txt}") into ascatOutput