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Optimizing complex balance #871

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vyudu opened this issue May 23, 2024 · 1 comment
Open

Optimizing complex balance #871

vyudu opened this issue May 23, 2024 · 1 comment

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@vyudu
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vyudu commented May 23, 2024

Some performance/scalability improvements for the complex balance check:

  1. Implementing a more efficient way to generate the spanning trees in a graph
  2. Computing the tree weights one-by-one to reduce the space overhead
  3. Is there a more efficient way to check that $D^T \text{ Ln } \rho$ is in the image of $S$?
@vyudu
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vyudu commented May 31, 2024

Also, need to add a test checking conditional complex balance, i.e. a reaction network that is complex balance for some set of rate parameters but not for a different set.

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