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(I haven't used them in a while so they may not be fully up to date - open an issue there if you find anything that doesn't work any more and I can update)
I ran the command scripts/download_script.sh, and the following error messages occurred during execution:
2023-12-06 16:39:00 (3.71 MB/s) - ‘archaea_summary.txt’ saved [8532546]
/var/spool/slurmd/job18464/slurm_script: line 48: /usr/bin/gunzip: Argument list too long
cat: 'bacteria/*.fna': No such file or directory
I'm not sure which part went wrong, nor do I know if the command to download the dataset was completed.
Please put issues in that repo there.
Can you say which directories were created and which files were downloaded?
From the information you posted, it looks like the expansion of * in the gunzip produces a command that is too long since there are too many files.
You should be able to replace the line gunzip bacteria/*.gz with find ./bacteria -name "*.gz" -exec gunzip {} +
Hello, may I ask if you can provide a chromosome dataset for training purposes
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