diff --git a/_pkgdown.yml b/_pkgdown.yml index e8dd193f..2c00fe0f 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -1,6 +1,6 @@ template: params: - bootswatch: slate + bootswatch: united destination: docs authors: diff --git a/docs/404.html b/docs/404.html index d050b3c1..54148e7c 100644 --- a/docs/404.html +++ b/docs/404.html @@ -19,7 +19,7 @@ - + diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 1bf11c44..1cefb8e4 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -19,7 +19,7 @@ - + diff --git a/docs/LICENSE.html b/docs/LICENSE.html index 674b8e47..ba765066 100644 --- a/docs/LICENSE.html +++ b/docs/LICENSE.html @@ -19,7 +19,7 @@ - + diff --git a/docs/README_zh.html b/docs/README_zh.html index 2e6941db..c749e8de 100644 --- a/docs/README_zh.html +++ b/docs/README_zh.html @@ -19,7 +19,7 @@ - + @@ -134,7 +134,7 @@

安装

# Or BiocManager::install("sigminer", dependencies = TRUE)

从 Gitee 上安装开发版本：

-
remotes::install_git("https://gitee.com/ShixiangWang/sigminer", dependencies = TRUE)
+
remotes::install_git("https://gitee.com/ShixiangWang/sigminer", dependencies = TRUE)

使用文档

diff --git a/docs/articles/index.html b/docs/articles/index.html index 2a25aae5..9f0d2e9c 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -19,7 +19,7 @@ - + diff --git a/docs/articles/sigminer.html b/docs/articles/sigminer.html index a93a476a..09374d84 100644 --- a/docs/articles/sigminer.html +++ b/docs/articles/sigminer.html @@ -12,7 +12,7 @@ - + diff --git a/docs/authors.html b/docs/authors.html index e1bda22a..d270f183 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -19,7 +19,7 @@ - + diff --git a/docs/index.html b/docs/index.html index c310e262..16b42bd7 100644 --- a/docs/index.html +++ b/docs/index.html @@ -13,7 +13,7 @@ - + @@ -138,9 +138,9 @@

# Or BiocManager::install("sigminer", dependencies = TRUE)

You can install the development version of sigminer from Github with:

-
remotes::install_github("ShixiangWang/sigminer", dependencies = TRUE)
+
remotes::install_github("ShixiangWang/sigminer", dependencies = TRUE)
 # For Chinese users, run 
-remotes::install_git("https://gitee.com/ShixiangWang/sigminer", dependencies = TRUE)

+remotes::install_git("https://gitee.com/ShixiangWang/sigminer", dependencies = TRUE)

diff --git a/docs/news/index.html b/docs/news/index.html index d0a3d5e0..6a4b2b13 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -19,7 +19,7 @@ - + @@ -125,22 +125,22 @@

Changelog

Source: NEWS.md
-
+

-sigminer 1.0.10 Unreleased +sigminer 1.0.10 Unreleased

-
+

-sigminer 1.0.9 Unreleased +sigminer 1.0.9 Unreleased

  • Tried to speed up joining adjacent segments in read_copynumber(), got 200% improvement.
-
+

-sigminer 1.0.8 Unreleased +sigminer 1.0.8 Unreleased

-
+

-sigminer 1.0.7 2020-06-17 +sigminer 1.0.7 2020-06-17

  • Fixed bug in OsCN feature calculation.
    • @@ -173,9 +173,9 @@

  • Fixed bug about signature profile plotting for method ‘M’.

-
+

-sigminer 1.0.6 2020-06-01 +sigminer 1.0.6 2020-06-01

  • Added “scatter” in sig_fit() function to better visualize a few samples.
    • @@ -194,9 +194,9 @@

  • Added COSMIC TSB signatures.

-
+

-sigminer 1.0.5 2020-05-14 +sigminer 1.0.5 2020-05-14

  • Exported APOBEC result when the mode is ‘ALL’ in sig_tally().
    • @@ -205,9 +205,9 @@

  • Added strand feature to signature profile.

-
+

-sigminer 1.0.4 Unreleased +sigminer 1.0.4 Unreleased

  • Added profile plot for DBS and INDEL.
    • @@ -215,9 +215,9 @@

  • Fixed method ‘M’ for CN tally cannot work when cores > 1 (#161).

-
+

-sigminer 1.0.3 2020-04-30 +sigminer 1.0.3 2020-04-30

  • Added multiple methods for sig_fit().
    • @@ -230,27 +230,27 @@

  • Updated citation.

-
+

-sigminer 1.0.2 Unreleased +sigminer 1.0.2 Unreleased

  • Added merged transcript info for hg19 and hg38 build, this is availabe by data().
  • Added gene info for hg19 and hg38 build to extdata directory.
-
+

-sigminer 1.0.1 Unreleased +sigminer 1.0.1 Unreleased

  • Removed fuzzyjoin package from dependency.
  • Moved ggalluvial package to field suggsets.
-
+

-sigminer 1.0.0 2020-03-31 +sigminer 1.0.0 2020-03-31

All users, this is a break-through version of sigminer, most of functions have been modified, more features are implemented. Please read the reference list to see the function groups and their functionalities.

Please read the vignette for usage.

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 47493e69..a29c96bf 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -3,5 +3,5 @@ pkgdown: 1.5.1 pkgdown_sha: ~ articles: sigminer: sigminer.html -last_built: 2020-08-04T06:16Z +last_built: 2020-08-04T07:21Z diff --git a/docs/reference/CN.features.html b/docs/reference/CN.features.html index fff29025..769d04a9 100644 --- a/docs/reference/CN.features.html +++ b/docs/reference/CN.features.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/CopyNumber-class.html b/docs/reference/CopyNumber-class.html index 3b2fd96b..580031bc 100644 --- a/docs/reference/CopyNumber-class.html +++ b/docs/reference/CopyNumber-class.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/MAF-class.html b/docs/reference/MAF-class.html index 6bf564ad..abfecac7 100644 --- a/docs/reference/MAF-class.html +++ b/docs/reference/MAF-class.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/add_h_arrow.html b/docs/reference/add_h_arrow.html index 33b4e506..d56ee4fd 100644 --- a/docs/reference/add_h_arrow.html +++ b/docs/reference/add_h_arrow.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/add_labels.html b/docs/reference/add_labels.html index 02aaf275..71f3f131 100644 --- a/docs/reference/add_labels.html +++ b/docs/reference/add_labels.html @@ -19,7 +19,7 @@ - + @@ -189,7 +189,7 @@

Arg ... -

other parameters passing to ggplot2::annotate.

+

other parameters passing to ggplot2::annotate.

diff --git a/docs/reference/centromeres.hg19.html b/docs/reference/centromeres.hg19.html index b5400047..43979837 100644 --- a/docs/reference/centromeres.hg19.html +++ b/docs/reference/centromeres.hg19.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/centromeres.hg38.html b/docs/reference/centromeres.hg38.html index 09185369..f34729df 100644 --- a/docs/reference/centromeres.hg38.html +++ b/docs/reference/centromeres.hg38.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/centromeres.mm10.html b/docs/reference/centromeres.mm10.html index 0c5ffcf7..b0a01420 100644 --- a/docs/reference/centromeres.mm10.html +++ b/docs/reference/centromeres.mm10.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/chromsize.hg19.html b/docs/reference/chromsize.hg19.html index 4e68e57e..afb99208 100644 --- a/docs/reference/chromsize.hg19.html +++ b/docs/reference/chromsize.hg19.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/chromsize.hg38.html b/docs/reference/chromsize.hg38.html index 12a76b17..4ec3427e 100644 --- a/docs/reference/chromsize.hg38.html +++ b/docs/reference/chromsize.hg38.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/chromsize.mm10.html b/docs/reference/chromsize.mm10.html index ede6d193..108ac9ca 100644 --- a/docs/reference/chromsize.mm10.html +++ b/docs/reference/chromsize.mm10.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/cosine.html b/docs/reference/cosine.html index 3bb84911..0a7ee9e8 100644 --- a/docs/reference/cosine.html +++ b/docs/reference/cosine.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/cytobands.hg19.html b/docs/reference/cytobands.hg19.html index cc635708..6bd012bb 100644 --- a/docs/reference/cytobands.hg19.html +++ b/docs/reference/cytobands.hg19.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/cytobands.hg38.html b/docs/reference/cytobands.hg38.html index 2b4f1193..d145ff22 100644 --- a/docs/reference/cytobands.hg38.html +++ b/docs/reference/cytobands.hg38.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/cytobands.mm10.html b/docs/reference/cytobands.mm10.html index 8020bfdc..d8c6a058 100644 --- a/docs/reference/cytobands.mm10.html +++ b/docs/reference/cytobands.mm10.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/enrich_component_strand_bias.html b/docs/reference/enrich_component_strand_bias.html index a9b10f2b..e996b488 100644 --- a/docs/reference/enrich_component_strand_bias.html +++ b/docs/reference/enrich_component_strand_bias.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/get_adj_p.html b/docs/reference/get_adj_p.html index 2c01ce3e..c1cae4a7 100644 --- a/docs/reference/get_adj_p.html +++ b/docs/reference/get_adj_p.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/get_bayesian_result.html b/docs/reference/get_bayesian_result.html index b597493a..bc5dedd1 100644 --- a/docs/reference/get_bayesian_result.html +++ b/docs/reference/get_bayesian_result.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/get_cn_ploidy.html b/docs/reference/get_cn_ploidy.html index 481754c6..7607d791 100644 --- a/docs/reference/get_cn_ploidy.html +++ b/docs/reference/get_cn_ploidy.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/get_genome_annotation.html b/docs/reference/get_genome_annotation.html index 4e14aab6..13ab668c 100644 --- a/docs/reference/get_genome_annotation.html +++ b/docs/reference/get_genome_annotation.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/get_group_comparison.html b/docs/reference/get_group_comparison.html index f62d314b..eefeb127 100644 --- a/docs/reference/get_group_comparison.html +++ b/docs/reference/get_group_comparison.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/get_groups.html b/docs/reference/get_groups.html index 83d5194b..6828ab36 100644 --- a/docs/reference/get_groups.html +++ b/docs/reference/get_groups.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/get_sig_db.html b/docs/reference/get_sig_db.html index f250059b..92b11b94 100644 --- a/docs/reference/get_sig_db.html +++ b/docs/reference/get_sig_db.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/get_sig_exposure.html b/docs/reference/get_sig_exposure.html index 71e02e94..b717f3db 100644 --- a/docs/reference/get_sig_exposure.html +++ b/docs/reference/get_sig_exposure.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/get_sig_feature_association.html b/docs/reference/get_sig_feature_association.html index af2131fd..8f90c379 100644 --- a/docs/reference/get_sig_feature_association.html +++ b/docs/reference/get_sig_feature_association.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/get_sig_similarity.html b/docs/reference/get_sig_similarity.html index 6c4d9e09..2f229ffb 100644 --- a/docs/reference/get_sig_similarity.html +++ b/docs/reference/get_sig_similarity.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/get_tidy_association.html b/docs/reference/get_tidy_association.html index c323e142..61bf03ef 100644 --- a/docs/reference/get_tidy_association.html +++ b/docs/reference/get_tidy_association.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/get_tidy_parameter.html b/docs/reference/get_tidy_parameter.html index 769c31f1..19db8975 100644 --- a/docs/reference/get_tidy_parameter.html +++ b/docs/reference/get_tidy_parameter.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/handle_hyper_mutation.html b/docs/reference/handle_hyper_mutation.html index d3c56e75..cd786e34 100644 --- a/docs/reference/handle_hyper_mutation.html +++ b/docs/reference/handle_hyper_mutation.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/hello.html b/docs/reference/hello.html index e1fe2444..87eae3df 100644 --- a/docs/reference/hello.html +++ b/docs/reference/hello.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/index.html b/docs/reference/index.html index 64ae87bc..0fe85d39 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/pipe.html b/docs/reference/pipe.html index 7862fffe..bd096d0b 100644 --- a/docs/reference/pipe.html +++ b/docs/reference/pipe.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/read_copynumber.html b/docs/reference/read_copynumber.html index 1065114d..4a316c2a 100644 --- a/docs/reference/read_copynumber.html +++ b/docs/reference/read_copynumber.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/read_copynumber_seqz.html b/docs/reference/read_copynumber_seqz.html index b13c3306..aed8d690 100644 --- a/docs/reference/read_copynumber_seqz.html +++ b/docs/reference/read_copynumber_seqz.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/read_maf.html b/docs/reference/read_maf.html index b6f29fdb..f0b905e3 100644 --- a/docs/reference/read_maf.html +++ b/docs/reference/read_maf.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/read_vcf.html b/docs/reference/read_vcf.html index a8e3ea28..032e12bf 100644 --- a/docs/reference/read_vcf.html +++ b/docs/reference/read_vcf.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/report_bootstrap_p_value.html b/docs/reference/report_bootstrap_p_value.html index b182527d..ec6d17bf 100644 --- a/docs/reference/report_bootstrap_p_value.html +++ b/docs/reference/report_bootstrap_p_value.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/scoring.html b/docs/reference/scoring.html index c46e5106..71a870ab 100644 --- a/docs/reference/scoring.html +++ b/docs/reference/scoring.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/show_catalogue.html b/docs/reference/show_catalogue.html index 5163ea3e..e15bc997 100644 --- a/docs/reference/show_catalogue.html +++ b/docs/reference/show_catalogue.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/show_cn_circos.html b/docs/reference/show_cn_circos.html index 8b959554..c1db5676 100644 --- a/docs/reference/show_cn_circos.html +++ b/docs/reference/show_cn_circos.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/show_cn_components.html b/docs/reference/show_cn_components.html index e63d864a..2ae7a6d7 100644 --- a/docs/reference/show_cn_components.html +++ b/docs/reference/show_cn_components.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/show_cn_distribution.html b/docs/reference/show_cn_distribution.html index ec037671..c0f89a7b 100644 --- a/docs/reference/show_cn_distribution.html +++ b/docs/reference/show_cn_distribution.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/show_cn_features.html b/docs/reference/show_cn_features.html index 08bf7032..e4a4d8f9 100644 --- a/docs/reference/show_cn_features.html +++ b/docs/reference/show_cn_features.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/show_cn_profile.html b/docs/reference/show_cn_profile.html index 75e32f86..a8e6b776 100644 --- a/docs/reference/show_cn_profile.html +++ b/docs/reference/show_cn_profile.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/show_cosmic_sig_profile.html b/docs/reference/show_cosmic_sig_profile.html index b2ac6ba4..c5138382 100644 --- a/docs/reference/show_cosmic_sig_profile.html +++ b/docs/reference/show_cosmic_sig_profile.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/show_group_comparison.html b/docs/reference/show_group_comparison.html index 7e0a61c9..577b9330 100644 --- a/docs/reference/show_group_comparison.html +++ b/docs/reference/show_group_comparison.html @@ -19,7 +19,7 @@ - + diff --git a/docs/reference/show_group_mapping.html b/docs/reference/show_group_mapping.html index bf8573e4..c13de75a 100644 --- a/docs/reference/show_group_mapping.html +++ b/docs/reference/show_group_mapping.html @@ -19,7 +19,7 @@ - + @@ -191,7 +191,7 @@

Value

a ggplot object

Examples

- 
data <- dplyr::tibble(
+    
data <- dplyr::tibble(
   Group1 = rep(LETTERS[1:5], each = 10),
   Group2 = rep(LETTERS[6:15], each = 5),
   zzzz = c(rep("xx", 20), rep("yy", 20), rep(NA, 10))
diff --git a/docs/reference/show_groups.html b/docs/reference/show_groups.html
index 74462da0..ec8fc362 100644
--- a/docs/reference/show_groups.html
+++ b/docs/reference/show_groups.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/show_sig_bootstrap.html b/docs/reference/show_sig_bootstrap.html
index dd2da38b..f3374f99 100644
--- a/docs/reference/show_sig_bootstrap.html
+++ b/docs/reference/show_sig_bootstrap.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/show_sig_consensusmap.html b/docs/reference/show_sig_consensusmap.html
index 142444f5..723dc700 100644
--- a/docs/reference/show_sig_consensusmap.html
+++ b/docs/reference/show_sig_consensusmap.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/show_sig_exposure.html b/docs/reference/show_sig_exposure.html
index cd0f223d..8d564712 100644
--- a/docs/reference/show_sig_exposure.html
+++ b/docs/reference/show_sig_exposure.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/show_sig_feature_corrplot.html b/docs/reference/show_sig_feature_corrplot.html
index dee1905d..a44e063c 100644
--- a/docs/reference/show_sig_feature_corrplot.html
+++ b/docs/reference/show_sig_feature_corrplot.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/show_sig_fit.html b/docs/reference/show_sig_fit.html
index 11c863f2..c0f6ebb8 100644
--- a/docs/reference/show_sig_fit.html
+++ b/docs/reference/show_sig_fit.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
@@ -228,7 +228,7 @@ 
Arg
     
       ...
       
other arguments to be passed to
-geom_boxplot, ggpar and
+geom_boxplot, ggpar and
 facet.

     
     
diff --git a/docs/reference/show_sig_number_survey.html b/docs/reference/show_sig_number_survey.html
index 8428eb25..92bd1499 100644
--- a/docs/reference/show_sig_number_survey.html
+++ b/docs/reference/show_sig_number_survey.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/show_sig_number_survey2.html b/docs/reference/show_sig_number_survey2.html
index 692c92c8..c1653c14 100644
--- a/docs/reference/show_sig_number_survey2.html
+++ b/docs/reference/show_sig_number_survey2.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/show_sig_profile.html b/docs/reference/show_sig_profile.html
index d6202cb0..a87639f6 100644
--- a/docs/reference/show_sig_profile.html
+++ b/docs/reference/show_sig_profile.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/show_sig_profile_heatmap.html b/docs/reference/show_sig_profile_heatmap.html
index 6e0f9061..5f6b09a8 100644
--- a/docs/reference/show_sig_profile_heatmap.html
+++ b/docs/reference/show_sig_profile_heatmap.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/sig_auto_extract.html b/docs/reference/sig_auto_extract.html
index dcb34754..c2149bf2 100644
--- a/docs/reference/sig_auto_extract.html
+++ b/docs/reference/sig_auto_extract.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/sig_convert.html b/docs/reference/sig_convert.html
index 186f4ed7..4c0dde4a 100644
--- a/docs/reference/sig_convert.html
+++ b/docs/reference/sig_convert.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/sig_estimate.html b/docs/reference/sig_estimate.html
index bb161cd7..b240b04a 100644
--- a/docs/reference/sig_estimate.html
+++ b/docs/reference/sig_estimate.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/sig_extract.html b/docs/reference/sig_extract.html
index 4b9a6b36..24d73936 100644
--- a/docs/reference/sig_extract.html
+++ b/docs/reference/sig_extract.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/sig_fit.html b/docs/reference/sig_fit.html
index 42e5325d..3185461e 100644
--- a/docs/reference/sig_fit.html
+++ b/docs/reference/sig_fit.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/sig_fit_bootstrap.html b/docs/reference/sig_fit_bootstrap.html
index 15da1d56..1c39453d 100644
--- a/docs/reference/sig_fit_bootstrap.html
+++ b/docs/reference/sig_fit_bootstrap.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/sig_fit_bootstrap_batch.html b/docs/reference/sig_fit_bootstrap_batch.html
index 846d8255..262006ef 100644
--- a/docs/reference/sig_fit_bootstrap_batch.html
+++ b/docs/reference/sig_fit_bootstrap_batch.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/sig_operation.html b/docs/reference/sig_operation.html
index 52fa093f..8005b7b2 100644
--- a/docs/reference/sig_operation.html
+++ b/docs/reference/sig_operation.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/sig_tally.html b/docs/reference/sig_tally.html
index b8fa2aeb..543f2065 100644
--- a/docs/reference/sig_tally.html
+++ b/docs/reference/sig_tally.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/sigminer.html b/docs/reference/sigminer.html
index 7bc72dcb..516996d9 100644
--- a/docs/reference/sigminer.html
+++ b/docs/reference/sigminer.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/sigprofiler.html b/docs/reference/sigprofiler.html
index 595ed01b..7476c286 100644
--- a/docs/reference/sigprofiler.html
+++ b/docs/reference/sigprofiler.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/subset.CopyNumber.html b/docs/reference/subset.CopyNumber.html
index fc68e990..acf6432d 100644
--- a/docs/reference/subset.CopyNumber.html
+++ b/docs/reference/subset.CopyNumber.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/tidyeval.html b/docs/reference/tidyeval.html
index cc2a796a..f99f4578 100644
--- a/docs/reference/tidyeval.html
+++ b/docs/reference/tidyeval.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
@@ -162,22 +162,22 @@ 
Tidy eval helpers

     

     
 
    
-
  • sym() creates a symbol from a string and
-syms() creates a list of symbols from a
+
  • sym() creates a symbol from a string and
+syms() creates a list of symbols from a
 character vector.
    • 
-
  • enquo() and
-enquos() delay the execution of one or
+
  • enquo() and
+enquos() delay the execution of one or
 several function arguments. enquo() returns a single quoted
 expression, which is like a blueprint for the delayed computation.
 enquos() returns a list of such quoted expressions.
    • 
-
  • expr() quotes a new expression locally. It
+
  • expr() quotes a new expression locally. It
 is mostly useful to build new expressions around arguments
 captured with enquo() or enquos():
 expr(mean(!!enquo(arg), na.rm = TRUE)).
    • 
-
  • as_name() transforms a quoted variable name
+
  • as_name() transforms a quoted variable name
 into a string. Supplying something else than a quoted variable
 name is an error.
    
-
    That's unlike as_label() which also returns
+
    That's unlike as_label() which also returns
 a single string but supports any kind of R object as input,
 including quoted function calls and vectors. Its purpose is to
 summarise that object into a single label. That label is often
diff --git a/docs/reference/transcript.hg19.html b/docs/reference/transcript.hg19.html
index f13aa8fb..d4a83f9d 100644
--- a/docs/reference/transcript.hg19.html
+++ b/docs/reference/transcript.hg19.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/transcript.hg38.html b/docs/reference/transcript.hg38.html
index 729f83e2..8774d273 100644
--- a/docs/reference/transcript.hg38.html
+++ b/docs/reference/transcript.hg38.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/transcript.mm10.html b/docs/reference/transcript.mm10.html
index 71ca2ef8..496cd243 100644
--- a/docs/reference/transcript.mm10.html
+++ b/docs/reference/transcript.mm10.html
@@ -19,7 +19,7 @@
 
 
 
-
+
 
 
 
diff --git a/docs/reference/use_color_style.html b/docs/reference/use_color_style.html
index a87d57c7..03b8892b 100644
--- a/docs/reference/use_color_style.html
+++ b/docs/reference/use_color_style.html
@@ -19,7 +19,7 @@
 
 
 
-
+