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Is there any way I extract the pie composition from the cluster composition graph and information regarding the contribution of genes toward pseudo-time branching from the fine-grained pseudo-time analysis?
Thanks
The text was updated successfully, but these errors were encountered:
type(v0)#via_object of pyVIAcluster_i_loc=np.where(np.asarray(v0.labels) ==1)[0]
dict(adata.obs.iloc[cluster_i_loc].value_counts('label'))
cluster_i_loc give the position of the composition of pie chart you interested in adata.obs. If you think this is difficult, you can also try the Pyomic package I developed, which integrates pyVIA, and you can get the composition of a given pie directly via Pyomic.single.pyVIA.get_piechart_dict(label=0, cluster='cell_type'). Let me know if you have any questions or feedback. Thanks!"
Hi,
Is there any way I extract the pie composition from the cluster composition graph and information regarding the contribution of genes toward pseudo-time branching from the fine-grained pseudo-time analysis?
Thanks
The text was updated successfully, but these errors were encountered: