pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	
	<properties>
		<bundle.symbolicName>dk.sdu.compbio.cytomcs</bundle.symbolicName>
		<bundle.namespace>dk.sdu.compbio.cytomcs</bundle.namespace>
		<cytoscape.api.version>3.0.0</cytoscape.api.version>
		
		<osgi.api.version>4.2.0</osgi.api.version>
	</properties>

	<groupId>dk.sdu.compbio.cytomcs</groupId>
	<artifactId>cytomcs</artifactId>
	<packaging>bundle</packaging>
	<version>1.1</version>
	
	<name>CytoMCS</name>

	<build>
		<plugins>
			<plugin>
				<inherited>true</inherited>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>3.0</version>
				<configuration>
					<source>1.8</source>
					<target>1.8</target>
					<optimize>true</optimize>
					<showWarnings>true</showWarnings>
					<showDeprecation>true</showDeprecation>
					<compilerArguments>
						<Xmaxwarns>10000</Xmaxwarns>
						<Xmaxerrs>10000</Xmaxerrs>
					</compilerArguments>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.apache.felix</groupId>
				<artifactId>maven-bundle-plugin</artifactId>
				<version>3.2.0</version>
				<extensions>true</extensions>
				<configuration>
					<instructions>
						<Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName>
						<Bundle-Version>${project.version}</Bundle-Version>
						<Private-Package>${bundle.namespace}.internal.*</Private-Package>
                        <Export-Package>${bundle.namespace}</Export-Package>
						<Bundle-Activator>${bundle.namespace}.internal.CyActivator</Bundle-Activator>

                        <Embed-Dependency>*;scope=!provided|test;groupId=!org.cytoscape</Embed-Dependency>
                        <Embed-Transitive>true</Embed-Transitive>
                        <Import-Package>*;resolution:=optional</Import-Package>
					</instructions>
				</configuration>
			</plugin>
		</plugins>
	</build>

	<!-- Links to the Cytoscape Maven repositories. -->
	<repositories>
		<repository>
			<id>cytoscape_snapshots</id>
			<snapshots>
				<enabled>true</enabled>
			</snapshots>
			<releases>
				<enabled>false</enabled>
			</releases>
			<name>Cytoscape Snapshots</name>
			<url>http://code.cytoscape.org/nexus/content/repositories/snapshots/</url>
		</repository>
		<repository>
			<id>cytoscape_releases</id>
			<snapshots>
				<enabled>false</enabled>
			</snapshots>
			<releases>
				<enabled>true</enabled>
			</releases>
			<name>Cytoscape Releases</name>
			<url>http://code.cytoscape.org/nexus/content/repositories/releases/</url>
		</repository>
	</repositories>

	<dependencies>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>swing-application-api</artifactId>
			<version>${cytoscape.api.version}</version>
            <scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>work-api</artifactId>
			<version>${cytoscape.api.version}</version>
            <scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>service-api</artifactId>
			<version>${cytoscape.api.version}</version>
            <scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.osgi</groupId>
			<artifactId>org.osgi.core</artifactId>
			<version>${osgi.api.version}</version>
            <scope>provided</scope>
		</dependency>

		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<version>4.8.2</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.mockito</groupId>
			<artifactId>mockito-all</artifactId>
			<version>1.8.5</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.ops4j.pax.logging</groupId>
			<artifactId>pax-logging-api</artifactId>
			<version>1.5.2</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>service-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<type>test-jar</type>
			<scope>test</scope>
		</dependency>

        <!-- project dependencies (must be marked as optional!) -->
		<dependency>
			<groupId>dk.sdu.compbio.faithmcs</groupId>
			<artifactId>faithmcs</artifactId>
			<version>0.2</version>
			<optional>true</optional>
		</dependency>
        <dependency>
            <groupId>org.jgrapht</groupId>
            <artifactId>jgrapht-core</artifactId>
            <version>1.0.1</version>
            <optional>true</optional>
        </dependency>
        <dependency>
            <groupId>org.jgrapht</groupId>
            <artifactId>jgrapht-ext</artifactId>
            <version>0.9.2</version>
            <optional>true</optional>
        </dependency>
        <dependency>
            <groupId>com.miglayout</groupId>
            <artifactId>miglayout-swing</artifactId>
            <version>5.0</version>
            <optional>true</optional>
        </dependency>
	</dependencies>
</project>