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Suggestion: add the choice of H&E stains to nuclei segment instead of DAPI stains #25

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falsetry1514 opened this issue Sep 10, 2024 · 0 comments

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@falsetry1514
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Hi, BIDCell Team.
For some Sequencing-based ST method, the DAPI stain wasn't recommend to do. Instead of DAPI, they use H&E stain to do ST pipeline, such as the new tech, openst. So Could you add a patch for H&E stain or just provide the nuclear mask by user to jump the nuclei_segment step. I think it will much better for multiplex demand.

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