- Change codecov settings (
fe32513) - Change codecov badge to reflect new org name (
41d5543) - Get rid of docs badge - causing glitch on rtd (
d0a65b4)
- Just rerun notebook and comment in the decomposition (
9763f79)
- Use synonyms for affect and reword relearning part (
f2ca67e) - Make rscript commands copy-pasteable (
e189d81) - Get rid of double inaccurate (
5363fe5) - Standardize docstrings (
cb4acf9) - Update docstrings (
27d801a) - Add line about running notebook locally (
2354f77) - Fix toc links (
3dc965b) - Add project directory: (
24357e4) - Add overview section (
41d8f3c) - Add copyright notice (
06800c6) - Add toc (
eeba7b4)
- Further trim down report (
f180279)
- Remove delete peak functions (
7246973) - For the future. notebook but with remove peak working. (
1fbd574) - Add the remove false peak feature (
52987ce)
- Fix data compatibility issues with hug data and peak selection and optimize some code (
31a83ce) - Fix RMSE broken (
cdc976d) - Latest notebook (
64307b8) - Make dashboard nice and streamlined. widgets for everything. Remove Delete Peak from main notebook for now (
8eeea97) - Method param is now str instead of function to allow for widget selection (
e9b504a) - Adding code to allow for team and source data to be visualised (
bf821eb) - Small tweaks to pulse (
e726429) - Fixing incorrect filtering of dataframe (
e6b5d23)
- Further document viz scripts, and couple minor patches (
7beb17b) - More viz comments (
e54660e) - Add comments to contrast.py (
fda6711) - Update comments (
fd3fcb0) - Update comments (
b3cd300) - Editing instructions in notebook (
de0baaf) - Editing instructions within notebook (
9a09ad2) - Update params in dashboard() function (
4b81d70)
- Add cran mirror (
e92eebb)
- Bring nb up to date before spinning it off to new branch (
ce882ce) - Viz script had trash on top (
f4eee35) - Resolve conflict (
8d592f6)
- Fix formatting of code chunks (
a2a70b0) - Add in-depth pdf rendering instructions (
53f1cb9) - Improved notebook documentation to elaborate that file extension doesnt need to be mat or have SIG (
9206266) - Add gui plots (
dcb0f36) - Re-write conclusion (
6994e74) - Fix grammar and spelling errors, make more abbreviations (
e984e3c) - Add equations and made revisions (
7fc21e9) - Add separation and preprocessing figures (
6f28822) - Change emg hardware img (
5c68672) - Fix reference formatting in methods (
915f733) - Name ot bioelletronica software and add references (
4d978cb) - Add references for motor unit fig and add general EMG tech fig (
041183d) - Comment and uncomment some cells so it looks nicer (
2d43e41) - Document the notebook more thoroughly (
494fb01) - Document the notebook (
2847d0e) - Document the notebook (
33245e4) - Document the notebook (
29c9b47) - Add github link (
d26b875) - Further revise intro (
80b10f0) - Revise the summary to include alexi's suggestions (
acf6dee) - Add accent to alexis name (
c0876ab) - Add copyright lines and descriptions of each script (
6454fd4) - Add link to choosealicense (
8f99ff4) - Add python version requirement (
d1f212a) - Incorporating revisions from feedback (
46b61f9) - Add list to the methods section (
ca90736)
- Remove unfinished peel-off function (
33146dd)
- Edit comment (
4381103)
- Add functions to and clean up visualization script (
a42226e)
- Making the notebook tick (
ad02d2c) - Add bandpass filtering to dashboard and get rid of other bugs (
e70a3f5) - Add default mu to dashboard func (
5d2d39e) - Add data massaging into dashboard (
ac38fb7) - Clean up comments and imports (
90ebe54)
- Shorten intro (
af41b4d) - Add info about results (
11a4503) - Edit methods (
942e74d) - Add a little more info to usage (
bc6eabc) - Fix formatting of some references (
a703821) - Update references (
42a6728) - Add final report images (
c8a278e) - Add summary and conclusions (
d21bf5b) - Update intro (
c778e05) - Add intro (
b9a909f) - Add line about future validation (
db3dbf2) - Add part about stakeholders (
068d470) - Update usage section (
7d72f0d) - Get rid of unnecessary hyphens (
9d2d859) - Update to reflect new license and all authors (
0a528e1) - Update package name (
e3340c5) - Fix formatting in credits (
3aa38ee) - Change license to gplv3 (
a9da174) - Update readme credits, description, and usage (
0bcb39c) - Write data product draft (
79bd1fa) - Write draft of data science methods section (
83dd899) - Create final report parent and child documents (
6c25266)
- Properly call bandpass args and R arg in decomposition (
03be854)
- Add band-pass filter function (
6a2fe0b) - Add more print statements to refinement (
2378e67) - Add discard channel argument (
532fde3) - Update decomposition (
3542783) - Update refinement (
8800cc3) - Update separation (
aa303a6) - Replace initialize_w with initial_w_matrix (
b2d4436) - Add rada's peel-off function (
fe7d0a2) - Add rada's orthogonalization wrapper (
cfca9cb) - Create deflate function (
2826f25) - Create gram-schmidt function (
3eccc57) - Create pulse to noise ratio function (
49515bc) - Add page numbers to plots (
7e6f0cd) - Create MUAP visualization functions (
04667f5) - Create new silhouette score function (
054f0b5) - Build initialize() function (
c0aec10) - New decomposition and initialize_w functions, changes to other functions (
80d62ff) - Add pulse train save functionality and made code clearer (
9fd71c5) - Add refinement function draft (
83d5174) - Create two other options for contrast functions and fix docstring for skew (
284fdf6) - Add orthogonalize, normalize, apply_contrast_fun_router, skew functions and skeleton of sepatation function (
79c0882)
- Rounding error in whitening test (
0bff4cf) - Correct regularization factor in whitening (
ea754c5) - Init test (
fdac487) - Import center_matrix (
d9fa2a8) - Change sil to use peaks and noise clusters instead of cluster a and cluster b (
d9fb56d) - Correct pnr formula (
d47045a) - Edit viz function to handle pt < l (
5bd542e) - Change column number (
1877030) - Fix pt dimensions and commented out count limitation in muap_plot (
1658379) - Variable typo (
3116cc8) - Minor test fix (
53114ee) - Orthogonalization and peel-off functions notebook (
ef05344) - Merge conflictuehriuhudviugfuvdbfvd (
f65c968) - Update interval (
9d2c021) - Omg comma making formatting funny (
4f55ddc) - Fix file path (
8a7de01) - Deleted the cursed doppleganger pnr function. merge my damn pr for love of god (
f211af1) - Remove incorrectly called function (
6f2b4d7) - Center firing in middle of signal interval (
9e5d39c) - Get rid of merge conflict (
2afed78) - Revert back to old muap interval (
3459a83) - Muap test interval symmetry (
1b68e13) - Fix: peak interval symmetry (
a26419f) - Update import statements (
a598132) - Reorder parameters where refinement is called in decomp function (
19a60cf) - Catch up decomp function to latest or else ci fails (
2de0281) - Keep finding small bugs in refine test (
34b98fc) - Remove unneeded vars, change path (
70b921c) - Path name again yikes (
4cac533) - Update path (
7036f9d) - Change facet variable (
e8ab3e1) - Add defintion of l in muap_plot() (
c882d48) - Path name in test_maup_dict() (
a6f8f52) - Fix file path in test_muap_dict() (
179929b) - Remove incorrect import statement (
a57bfe4) - Add emg import statement (
13a1ecd) - Remove extraneous test (
98a10d4) - Modify refinement test (
ec2b0d1) - Don't update separation vector after cv_curr > cv_prev (
e83ca1c) - Copy paste error, EOL string (
f6d4c17) - Add random_seed to kmeans (
4f70ec7) - Get rid of quotation marks in function arguments (
ff70083) - Get rid of redundant parameters and update decomposition to include new refinement parameters (
b15e5be) - For some reason my GLs are named GMs. Fixed path (
9fdc54f) - Tweak refinement function to allow for random seed for testing (
6561667) - Change function to average over every MUAP firing instead of every channel (
2cc8837) - Get rid of double ptl assignment (
27702fc) - Change silhouette_score function in refinement (
4fb0eb4) - Fix intra_sums (
be163f1) - Fix inter_cluster sum and replace silhouette function in refinement (
9c8ebc7) - Get rid of second kmeans parameter (
7a783b1) - Correct sklearn inputs and change it to save PT only if source is extracted (
0f4c7bb) - I edited the wrong test_function lol (
0bb15e8) - In test_log_cosh(), switch np.isclose to np.allclose [to test array calculations] (
97259aa) - Forgot to define test_arr for test_apply_contrast (
e0266f2) - Change np.array_equal() to np.isclose() in test_log_cosh() (
43e4c95) - Fix initialization of w (
a1f6f03) - Update variable name in skew() (
ab14b92) - Correct dimensions of output (
9666833) - Rewrite child contrast functions and docstrings to do arrays, rewrite parent apply_contrast function docstring accordingly (
2bc1fbf) - Add regularization step (
4225f2d) - Correct variable called by preprocessing functions (
0ada908) - Correct variable called by center_matrix (
1ca76f5) - Add flatten signal (
851bda3) - Change back to use real data (
45be0f4) - Add random state parameter and move W-prev=w_curr to end (
7026f25) - Fixed inf overflow error for log_cosh function (
12db8af) - Change x_cent to x (
5083274) - Correct submodule importation (
014c25c) - Get rid of centring in whiten function (
f113bc0) - Correct parameters in refinement function (
6b1d198) - Rearrange arguments in decomposion(), separation(), refinement() functions (
ddad019) - Improve skeleton of decomposition() function (
76e0f59) - Add B as argument to separation() (
ba3ba8b) - Resolve merge conflict (
3331f42) - Rearrange functions so referenced functions are before referencering (
635b913) - Use proper variables in separate function (
5a12803) - Build upon separation function (
ee0a84c) - Rewrite helper functions to have option to do derivative or not (
b0107ad) - Comment out shell of while loop so whole functions file doesn't appear broken (
9d105e6)
- Get rid of redundant argument in refinement docstring (
acd43f6) - Update returns in docstring (
0e76114) - Add period to docstring lol (
0285f88) - Update pnr docstring to include squared source (
cbc364c) - Get rid of unnecessary while loop comment (
8e85e98) - Edit docstring to reflect average over firings instead of channels (
de27058) - Get rid of plural 'unit tests' (
e358795) - Minor formatting changes (
cad3338) - Correct docstrings (
bf901e2) - Add correct data citations (
ead4b0d) - Standardize docstrings and correct examples (
99842fe) - Update separation function docstring (
004e087)
- Add whiten function to emg-decompy.py (
3682a09) - Create functions script, debug extension functions, write docstrings (
af7e346)
- Correct package name (
233aac0) - Incorrectly called create_emg_data() (
fe93f12) - Rearrange functions so create_emg_data() defined before called in test functions (
7a6c50b) - Tweak create_emg_data to use np.empty so that shape is consistent with real data (
97d67c9) - Tweak test_flatten_signal to test for empty arrays pre-flatten (
a7c0da4) - Small change to create_emg_data() function to not allow 1 dimensional arrays to be created (
e744a7c) - Change output dimensions so there are no 'channels' (
3cacf69) - Add reg factor to whiten but leave commented out (
7491d10) - Fix transpose error (
265592e) - Correct test name for extend_all_channels (
8f787ec) - Import linalg from scipy (
0ad2d15) - Properly call center_matrix function (
db209b3) - Output correct dimensions for extend_all_channels() (
deba7a4) - Get rid of codecov because repo is private (
dd2bb66) - Extend() function now outputs what we agreed upon (
98cfa16) - Figures were all showing weird, adding fig.pos='h' fixed it (
db47734) - Correct package name (
f4bf67f) - Correct package name (
76ae9fb) - Import packages, reference package name in functions (
62d839a) - Remove packages line (
1d0a6be) - Correct package name (
0163446) - Fix merge conflict and import emgdecompy (
0005d9f) - Changing file name to new package (
a8c18d5) - Changing package name in all documents (
22f3129) - Put vector extension tests within functions (
9b2fd18)
- Update creator names (
42f581e) - Add codecov badge (
a778710) - Update package name in test_extend_input_by_R (
f3022da) - Minor docstring inconsistencies in extend_all_channels() (
ce5fdd8) - Add clarification comment to test_flatten() according to Jasmine's feedback (
bcc735c) - Fix doc string for test_extend_by_R() (
79490f4) - Fix reference on page 2 (
ee57a46) - Make docstrings simpler and improve code commenting (
5b397c0) - Correct format of examples in center_matrix and make it simpler (
200bd66) - Correct docstring for extend_input_by_R (
3e8e9df) - Fix grammar in docstrings (
1190161) - Correct examples line in docstrings (
9a4441a) - Correct spelling of fibre in summary (
ea95835) - Bold figure cross-references' (
45a361f) - Made corrections to wordings, citations, figure locations (
9c48f68) - Replace emg hardware image (
dc33fae) - Replace ot screenshot with higher quality one (
ab702a6) - Replace ot screenshot with higher quality one (
80cfd4b) - Add visual of algorithm (
e88f15d) - Edit Timeline (
c4b210b) - Add more citations and figures (
80de991) - Update timeline (
afd53d2) - Add raw EMG image (
b638e46) - Fix Tools sections based on Alexi's feedback (
6f64943) - Fix package name (
eb2b26a) - Add Alexi's corrections (
5317c70) - Fix badge formatting (
f4aa37d) - Add ci-cd badge (
1d3cbf9) - Change package description (
16bf912) - Bottleneck is spelled with an e lol (
9fb41bc) - Improve docstring based on Daniel's advice (
7848f49) - Add proposal section to README (
89618b6) - Create layout of proposal and render to pdf (
423d6b3) - Make corrections (
adaa064) - Add bibtex references (
b299959) - Fix section on the interactive learning component (
e8fc753) - Make some edits and add bibtex (
6b79ea7) - Remove obsolete citations file (
1483e64) - Fix line breaks (
a1707a6) - Make corrections to techniques section and add bibtex (
d4af629) - Remove html output (
9107441) - Move titles from child docs to parent doc (
0abf1d6) - Create bibtex file (
f5c6920) - Add title to data science technique section (
f3ff884) - Add yaml metadata (
0a625c1) - Add proposal intro rmd (
472635a) - Rewrite tools section to use sentenses instead of bullet points (
503a4c2) - Create proposal folder and components (
042a808) - Create teamwork contract (
272638c)
- First release of
emgdecompy!