diff --git a/phylofisher/select_taxa.py b/phylofisher/select_taxa.py
index ddee9a2..696a1bc 100644
--- a/phylofisher/select_taxa.py
+++ b/phylofisher/select_taxa.py
@@ -36,7 +36,8 @@ def make_subset_tsv():
             for line in infile:
                 line = line.strip()
                 split_line = line.split('\t')
-                taxa[split_line[0]] = split_line[1:3]
+                taxa[split_line[0]] = split_line[1:4]
+    
 
     # Add Taxonomic Groups to DataFrame
     low_tax_list = [taxa[ind][2] for ind in df.index]
@@ -102,7 +103,7 @@ def gen_chimera(df):
         for line in infile:
             line = line.strip()
             split_line = line.split('\t')
-            chim_dict[split_line[0]] = split_line[3:]
+            chim_dict[split_line[0]] = split_line[4:]
 
     for key in chim_dict.keys():
         df['int_chim'] = 0
@@ -154,7 +155,7 @@ def update_dataframe(df):
                           """))
     optional.add_argument('--chimeras', type=str, metavar='chimeras.tsv', default=None,
                           help=textwrap.dedent("""\
-                           A .tsv containing a Unique ID, higher and lower taxonomic designations, 
+                           A .tsv containing a Unique ID, higher and lower taxonomic designations, long name, 
                            and the Unique IDs of the taxa to collapse, for each chimera one per line
                           """))
 
diff --git a/setup.py b/setup.py
index 5ee1b43..6439855 100644
--- a/setup.py
+++ b/setup.py
@@ -2,7 +2,7 @@
 
 setup(
     name='phylofisher',
-    version='1.2.7',
+    version='1.2.9',
     packages=find_packages(),
     scripts={'phylofisher/fisher.py',
              'phylofisher/config.py',