0.5.2

Bug fixes to GEX as well as image hashing/metadata for Visium.

0.5.1

Full Changelog: 0.5.0...0.5.1

0.5.0

Major changes:

• Rewrote samplesheet checking to be more flexible.
• Support for spaceranger actually works
• Support for cellranger feature barcoding runs
• Laying groundwork for cellranger multi

Full Changelog: 0.4.1...0.5.0

0.4.1

What's Changed

• Added quick check to discard .hidden files by @wflynny in #5

Full Changelog: 0.4.0...0.4.1

0.4.0

Changelog:

• Increment minor version
• bin/check_samplesheet.py now dumps valid records to a new file
• Processed hashes are now correctly computed (not just sequencing saturation)
• Input validation is now officially blocking
  Took a while due to some bugs (e.g. reading params.samplesheet in modules/samplesheet.nf) directly no matter what and misunderstandings on how to utilize/mix DSL2 functions and channels. Since there is no 'splitYaml' operator, we had to come up with our own functionality that is essentially Channel.fromPath(samplesheet) -> map vanilla yaml parsing -> flatten. However, the key detail was understanding how to call additional functions on this output, for which function argument typing is critical. Thank you to 'nf-core/rnaseq's subworkflows/local/input_check.nf for the helpful example of how to hopefully do this properly.

Full Changelog: 0.3.5...0.4.0

0.3.5

Changelog:

Major changes:

• Force input-checks to be blocking
• Rearrangement of main.nf and subworkflows
• Added code by @cheehongsg for performant read estimation.

Minor changes:

• standardize function/processing naming
• cleaned up prints / logging etc.
• replaced all name-based process selectors with label-based ones

Outstanding problems

• visium processing not fully functional yet, mostly due to a need to overhaul the samplesheet validation script.

Full Changelog: 0.2.5...0.3.5

0.2.5

Amended number of read approximation for cases where I1 read is missing.

0.2.4

FASTQ parsing compatible with NextSeq output.

0.2.3

BUGFIX: Add library CSV to GEX outputs no matter what

0.2.2

Fixed bug related to cellranger versions < 5.0.0 having --samples instead of --sample and failing.