rcmdcheck.yaml

# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on:
  schedule:
  - cron: '0 0 * * *'
  push:
    branches:
      - main
      - master
  pull_request:
    branches:
      - main
      - master

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          # - {os: windows-latest, r: 'release'}
          - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
          - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
          #- {os: ubuntu-20.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      KMP_DUPLICATE_LIB_OK: TRUE
    steps:
      - uses: actions/checkout@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}

      - uses: r-lib/actions/setup-pandoc@v2
      
      - name: TinyTex for non Windows
        if: runner.os != 'Windows'
        uses: r-lib/actions/setup-tinytex@v2
        env:
          TINYTEX_INSTALLER: TinyTeX
          #TINYTEX_VERSION: '2023.03'

      - name: TinyTex for Windows
        if: runner.os == 'Windows'
        uses: r-lib/actions/setup-tinytex@v2
        env:
          TINYTEX_INSTALLER: TinyTeX
          TINYTEX_VERSION: '2023.03'
          
      - name: TinyTex2 for Windows
        if: runner.os == 'Windows'
        uses: teatimeguest/setup-texlive-action@v2
      
      - name: Install makeindex
        run: |
          tlmgr install makeindex

      - name: Query dependencies
        run: |
          setwd("sjSDM")
          install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
          saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), "../.github/r-depends.rds")
        shell: Rscript {0}

      - name: Cache R packages
        if: runner.os != 'Windows'
        uses: actions/cache@v2
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }}
          restore-keys: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-

      - name: Install curl for r-devel version
        if: runner.os == 'Linux'
        run: |
          sudo apt-get install -y curl
          sudo apt-get install -y texlive texlive-fonts-extra

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          setwd("sjSDM")
          pak::local_system_requirements(execute = TRUE)
          pak::pkg_system_requirements("rcmdcheck", execute = TRUE)
        shell: Rscript {0}

      - name: Install dependencies
        run: |
          setwd("sjSDM")
          pak::local_install_dev_deps(upgrade = TRUE)
          pak::pkg_install("rcmdcheck")
        shell: Rscript {0}
        
      - name: Install Pkg
        run: |
          cd sjSDM
          Rscript -e "pak::local_install()"
          Rscript -e "pak::pkg_install('rstudio/reticulate')"
          Rscript -e "sjSDM::install_sjSDM(version='cpu')"
          
      - name: Check I
        env:
          _R_CHECK_CRAN_INCOMING_REMOTE_: false
          CI: true
        run: |
          options(crayon.enabled = TRUE)
          rcmdcheck::rcmdcheck("sjSDM", args = c("--no-multiarch", "--no-manual"), error_on = "error", check_dir = "check")
        shell: Rscript {0}
        
      - name: testthat output
        if: always()
        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
        shell: bash
        
      - name: Check II
        env:
          _R_CHECK_CRAN_INCOMING_REMOTE_: false
          CI: true
        run: |
          options(crayon.enabled = TRUE)
          rcmdcheck::rcmdcheck("sjSDM", args = c("--no-manual", "--as-cran"), error_on = "note", check_dir = "check")
        shell: Rscript {0}
        
      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@main
        with:
          name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results
          path: check