From 11152a0abfe67c528a363f89ea7a164468795e9f Mon Sep 17 00:00:00 2001 From: John Kerl Date: Wed, 11 Dec 2024 16:07:22 -0500 Subject: [PATCH 1/4] Use core 2.27.0 --- tools/tiledbVersion.txt | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tools/tiledbVersion.txt b/tools/tiledbVersion.txt index f5b420d778..9f5dd84c5f 100644 --- a/tools/tiledbVersion.txt +++ b/tools/tiledbVersion.txt @@ -1,2 +1,2 @@ -version: 2.26.2 -sha: 30fc114 +version: 2.27.0 +sha: 2862c30 From 5da57998881a96d598b716107c5f030a26600cc0 Mon Sep 17 00:00:00 2001 From: John Kerl Date: Wed, 11 Dec 2024 16:07:49 -0500 Subject: [PATCH 2/4] Use core 2.27.0 --- DESCRIPTION | 2 +- NEWS.md | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 3605d2a5a4..8012985510 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: tiledb Type: Package -Version: 0.30.2.4 +Version: 0.30.2.5 Title: Modern Database Engine for Complex Data Based on Multi-Dimensional Arrays Authors@R: c( person("TileDB, Inc.", role = c("aut", "cph")), diff --git a/NEWS.md b/NEWS.md index 13e5ddef9f..fab5f1ba57 100644 --- a/NEWS.md +++ b/NEWS.md @@ -7,6 +7,7 @@ * memory alloc: Accomodate zero buffer size estimate v2 * Apply `styler::style_pkg()` * Expose include/linking flags for re-using `libtiledb` in downstream packages +* Use TileDB Core 2.27.0 # tiledb 0.30.2 From 6b76b5055dcf9bb152dd12ec5513099a69bb4217 Mon Sep 17 00:00:00 2001 From: John Kerl Date: Wed, 11 Dec 2024 19:17:53 -0500 Subject: [PATCH 3/4] Run `devtools::document()` --- man/sub-tiledb_array-ANY-method.Rd | 6 +++--- man/sub-tiledb_config-ANY-method.Rd | 6 +++--- man/sub-tiledb_filter_list-ANY-method.Rd | 6 +++--- 3 files changed, 9 insertions(+), 9 deletions(-) diff --git a/man/sub-tiledb_array-ANY-method.Rd b/man/sub-tiledb_array-ANY-method.Rd index 3b5c6266f2..e623a16964 100644 --- a/man/sub-tiledb_array-ANY-method.Rd +++ b/man/sub-tiledb_array-ANY-method.Rd @@ -1,14 +1,14 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/TileDBArray.R -\name{[,tiledb_array,ANY-method} -\alias{[,tiledb_array,ANY-method} +\name{[,tiledb_array,ANY,ANY,ANY-method} +\alias{[,tiledb_array,ANY,ANY,ANY-method} \alias{[,tiledb_array} \alias{[,tiledb_array-method} \alias{[,tiledb_array,ANY,tiledb_array-method} \alias{[,tiledb_array,ANY,ANY,tiledb_array-method} \title{Returns a TileDB array, allowing for specific subset ranges.} \usage{ -\S4method{[}{tiledb_array,ANY}(x, i, j, ..., drop = FALSE) +\S4method{[}{tiledb_array,ANY,ANY,ANY}(x, i, j, ..., drop = FALSE) } \arguments{ \item{x}{tiledb_array object} diff --git a/man/sub-tiledb_config-ANY-method.Rd b/man/sub-tiledb_config-ANY-method.Rd index 6f8531345c..ba48d27ac1 100644 --- a/man/sub-tiledb_config-ANY-method.Rd +++ b/man/sub-tiledb_config-ANY-method.Rd @@ -1,14 +1,14 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/Config.R -\name{[,tiledb_config,ANY-method} -\alias{[,tiledb_config,ANY-method} +\name{[,tiledb_config,ANY,ANY,ANY-method} +\alias{[,tiledb_config,ANY,ANY,ANY-method} \alias{[,tiledb_config} \alias{[,tiledb_config-method} \alias{[,tiledb_config,ANY,tiledb_config-method} \alias{[,tiledb_config,ANY,ANY,tiledb_config-method} \title{Gets a config parameter value} \usage{ -\S4method{[}{tiledb_config,ANY}(x, i, j, ..., drop = FALSE) +\S4method{[}{tiledb_config,ANY,ANY,ANY}(x, i, j, ..., drop = FALSE) } \arguments{ \item{x}{\code{tiledb_config} object} diff --git a/man/sub-tiledb_filter_list-ANY-method.Rd b/man/sub-tiledb_filter_list-ANY-method.Rd index 6fe405f4a4..5f7ad8a853 100644 --- a/man/sub-tiledb_filter_list-ANY-method.Rd +++ b/man/sub-tiledb_filter_list-ANY-method.Rd @@ -1,14 +1,14 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/FilterList.R -\name{[,tiledb_filter_list,ANY-method} -\alias{[,tiledb_filter_list,ANY-method} +\name{[,tiledb_filter_list,ANY,ANY,ANY-method} +\alias{[,tiledb_filter_list,ANY,ANY,ANY-method} \alias{[,tiledb_filter_list} \alias{[,tiledb_filter_list-method} \alias{[,tiledb_filter_list,ANY,tiledb_filter_list-method} \alias{[,tiledb_filter_list,ANY,ANY,tiledb_filter_list-method} \title{Returns the filter at given index} \usage{ -\S4method{[}{tiledb_filter_list,ANY}(x, i, j, ..., drop = FALSE) +\S4method{[}{tiledb_filter_list,ANY,ANY,ANY}(x, i, j, ..., drop = FALSE) } \arguments{ \item{x}{\code{tiledb_config} object} From 82db624a57bcce9407ab2e568e5d04035ff2169a Mon Sep 17 00:00:00 2001 From: John Kerl Date: Wed, 11 Dec 2024 20:23:05 -0500 Subject: [PATCH 4/4] Rscript -e "devtools::document()" from the shell, not from R session --- man/sub-tiledb_array-ANY-method.Rd | 6 +++--- man/sub-tiledb_config-ANY-method.Rd | 6 +++--- man/sub-tiledb_filter_list-ANY-method.Rd | 6 +++--- 3 files changed, 9 insertions(+), 9 deletions(-) diff --git a/man/sub-tiledb_array-ANY-method.Rd b/man/sub-tiledb_array-ANY-method.Rd index e623a16964..3b5c6266f2 100644 --- a/man/sub-tiledb_array-ANY-method.Rd +++ b/man/sub-tiledb_array-ANY-method.Rd @@ -1,14 +1,14 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/TileDBArray.R -\name{[,tiledb_array,ANY,ANY,ANY-method} -\alias{[,tiledb_array,ANY,ANY,ANY-method} +\name{[,tiledb_array,ANY-method} +\alias{[,tiledb_array,ANY-method} \alias{[,tiledb_array} \alias{[,tiledb_array-method} \alias{[,tiledb_array,ANY,tiledb_array-method} \alias{[,tiledb_array,ANY,ANY,tiledb_array-method} \title{Returns a TileDB array, allowing for specific subset ranges.} \usage{ -\S4method{[}{tiledb_array,ANY,ANY,ANY}(x, i, j, ..., drop = FALSE) +\S4method{[}{tiledb_array,ANY}(x, i, j, ..., drop = FALSE) } \arguments{ \item{x}{tiledb_array object} diff --git a/man/sub-tiledb_config-ANY-method.Rd b/man/sub-tiledb_config-ANY-method.Rd index ba48d27ac1..6f8531345c 100644 --- a/man/sub-tiledb_config-ANY-method.Rd +++ b/man/sub-tiledb_config-ANY-method.Rd @@ -1,14 +1,14 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/Config.R -\name{[,tiledb_config,ANY,ANY,ANY-method} -\alias{[,tiledb_config,ANY,ANY,ANY-method} +\name{[,tiledb_config,ANY-method} +\alias{[,tiledb_config,ANY-method} \alias{[,tiledb_config} \alias{[,tiledb_config-method} \alias{[,tiledb_config,ANY,tiledb_config-method} \alias{[,tiledb_config,ANY,ANY,tiledb_config-method} \title{Gets a config parameter value} \usage{ -\S4method{[}{tiledb_config,ANY,ANY,ANY}(x, i, j, ..., drop = FALSE) +\S4method{[}{tiledb_config,ANY}(x, i, j, ..., drop = FALSE) } \arguments{ \item{x}{\code{tiledb_config} object} diff --git a/man/sub-tiledb_filter_list-ANY-method.Rd b/man/sub-tiledb_filter_list-ANY-method.Rd index 5f7ad8a853..6fe405f4a4 100644 --- a/man/sub-tiledb_filter_list-ANY-method.Rd +++ b/man/sub-tiledb_filter_list-ANY-method.Rd @@ -1,14 +1,14 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/FilterList.R -\name{[,tiledb_filter_list,ANY,ANY,ANY-method} -\alias{[,tiledb_filter_list,ANY,ANY,ANY-method} +\name{[,tiledb_filter_list,ANY-method} +\alias{[,tiledb_filter_list,ANY-method} \alias{[,tiledb_filter_list} \alias{[,tiledb_filter_list-method} \alias{[,tiledb_filter_list,ANY,tiledb_filter_list-method} \alias{[,tiledb_filter_list,ANY,ANY,tiledb_filter_list-method} \title{Returns the filter at given index} \usage{ -\S4method{[}{tiledb_filter_list,ANY,ANY,ANY}(x, i, j, ..., drop = FALSE) +\S4method{[}{tiledb_filter_list,ANY}(x, i, j, ..., drop = FALSE) } \arguments{ \item{x}{\code{tiledb_config} object}