notes.org

Introduction

General config

(setq
   org_notes (concat (getenv "HOME") "/work/roam")   
   deft-directory org_notes
   org-roam-directory org_notes
   )

(executable-find "sqlite3")
(add-hook 'after-init-hook 'org-roam-mode)

(use-package hide-mode-line
:ensure t
  :commands my/toggle-hide-mode-line
  :init
  (my/leader-keys
    "tm" 'my/toggle-hide-mode-line))

;;;###autoload
(defun my/toggle-hide-mode-line ()
  (interactive)
  (hide-mode-line-mode (if hide-mode-line-mode -1 +1))
  (unless hide-mode-line-mode
    (redraw-display)))

Deft

(use-package deft
  :commands deft
  :ensure t
  :init
  (setq deft-default-extension "org"
        ;; de-couples filename and note title:
        deft-use-filename-as-title nil
        deft-use-filter-string-for-filename t
        ;; disable auto-save
        deft-auto-save-interval -1.0
        ;; converts the filter string into a readable file-name using kebab-case:
        deft-file-naming-rules
        '((noslash . "-")
          (nospace . "-")
          (case-fn . downcase)))
  :config
  (add-to-list 'deft-extensions "tex")
  )

helm-bibtex

(setq
 bibtex-completion-notes-path "~/work/roam/"
 bibtex-completion-bibliography "~/work/bibliography/references.bib"
 bibtex-completion-pdf-field "file"
 bibtex-completion-notes-template-multiple-files
 (concat
  "#+TITLE: ${title}\n"
  "#+ROAM_KEY: cite:${=key=}\n"
  "* TODO Notes\n"
  ":PROPERTIES:\n"
  ":Custom_ID: ${=key=}\n"
  ":NOTER_DOCUMENT: %(orb-process-file-field \"${=key=}\")\n"
  ":AUTHOR: ${author-abbrev}\n"
  ":JOURNAL: ${journaltitle}\n"
  ":DATE: ${date}\n"
  ":YEAR: ${year}\n"
  ":DOI: ${doi}\n"
  ":URL: ${url}\n"
  ":END:\n\n"
  )
 )
   

org-ref

(use-package org-ref
    ;; :init
    ; code to run before loading org-ref
    :config
    (setq
         org-ref-completion-library 'org-ref-ivy-cite
         org-ref-get-pdf-filename-function 'org-ref-get-pdf-filename-helm-bibtex
         org-ref-default-bibliography (list "~/work/bibliography/references.bib")
         org-ref-bibliography-notes "~/work/roam/notes.org"
         org-ref-note-title-format "* TODO %y - %t\n :PROPERTIES:\n  :Custom_ID: %k\n  :NOTER_DOCUMENT: %F\n :ROAM_KEY: cite:%k\n  :AUTHOR: %9a\n  :JOURNAL: %j\n  :YEAR: %y\n  :VOLUME: %v\n  :PAGES: %p\n  :DOI: %D\n  :URL: %U\n :END:\n\n"
         org-ref-notes-directory "~/work/roam/"
         org-ref-notes-function 'orb-edit-notes
    ))

org-roam

(use-package org-roam
  :ensure t
  :hook (org-load . org-roam-mode)
  :commands (org-roam-buffer-toggle-display
             org-roam-find-file
             org-roam-graph
             org-roam-insert
             org-roam-switch-to-buffer
             org-roam-dailies-date
             org-roam-dailies-today
             org-roam-dailies-tomorrow
             org-roam-dailies-yesterday)
  :preface
  ;; Set this to nil so we can later detect whether the user has set a custom
  ;; directory for it, and default to `org-directory' if they haven't.
  (defvar org-roam-directory nil)
  :init
  :config
  (setq org-roam-directory (expand-file-name (or org-roam-directory "roam")
                                             org-directory)
        org-roam-verbose nil  ; https://youtu.be/fn4jIlFwuLU
        org-roam-buffer-no-delete-other-windows t ; make org-roam buffer sticky
        org-roam-completion-system 'default
        ))

;; Normally, the org-roam buffer doesn't open until you explicitly call
;; `org-roam'. If `+org-roam-open-buffer-on-find-file' is non-nil, the
;; org-roam buffer will be opened for you when you use `org-roam-find-file'
;; (but not `find-file', to limit the scope of this behavior).
(add-hook 'find-file-hook
          (defun +org-roam-open-buffer-maybe-h ()
            (and +org-roam-open-buffer-on-find-file
                 (memq 'org-roam-buffer--update-maybe post-command-hook)
                 (not (window-parameter nil 'window-side)) ; don't proc for popups
                 (not (eq 'visible (org-roam-buffer--visibility)))
                 (with-current-buffer (window-buffer)
                   (org-roam-buffer--get-create)))))

;; Hide the mode line in the org-roam buffer, since it serves no purpose. This
;; makes it easier to distinguish among other org buffers.
(add-hook 'org-roam-buffer-prepare-hook #'hide-mode-line-mode))


;; Since the org module lazy loads org-protocol (waits until an org URL is
;; detected), we can safely chain `org-roam-protocol' to it.
(use-package org-roam-protocol
  :ensure t
  :after org-protocol)


(use-package company-org-roam
  :ensure t
  :after org-roam
  :config
  (set-company-backend! 'org-mode '(company-org-roam company-yasnippet company-dabbrev)))

org-roam-bibtex

 (use-package org-roam-bibtex
:ensure t
  :after (org-roam)
  :hook (org-roam-mode . org-roam-bibtex-mode)
  :config
  (setq org-roam-bibtex-preformat-keywords
   '("=key=" "title" "url" "file" "author-or-editor" "keywords"))
  (setq orb-templates
        '(("r" "ref" plain (function org-roam-capture--get-point)
           ""
           :file-name "${slug}"
           :head "#+TITLE: ${=key=}: ${title}\n#+ROAM_KEY: ${ref}

- tags ::
- keywords :: ${keywords}

\n* ${title}\n  :PROPERTIES:\n  :Custom_ID: ${=key=}\n  :URL: ${url}\n  :AUTHOR: ${author-or-editor}\n  :NOTER_DOCUMENT: %(orb-process-file-field \"${=key=}\")\n  :NOTER_PAGE: \n  :END:\n\n"

           :unnarrowed t))))
   

(use-package org-noter
:ensure t
  :after (:any org pdf-view)
  :config
  (setq
   ;; The WM can handle splits
   org-noter-notes-window-location 'other-frame
   ;; Please stop opening frames
   org-noter-always-create-frame nil
   ;; I want to see the whole file
   org-noter-hide-other nil
   ;; Everything is relative to the main notes file
   org-noter-notes-search-path (list org_notes)
   )
  )

;; Since the org module lazy loads org-protocol (waits until an org URL is
;; detected), we can safely chain `org-roam-protocol' to it.
(use-package org-roam-protocol
  :ensure t
  :after org-protocol)



(use-package company-org-roam
  :ensure t
  :after org-roam
  :config
  (set-company-backend! 'org-mode '(company-org-roam company-yasnippet company-dabbrev)))