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worst-genbank-ever.gbk
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worst-genbank-ever.gbk
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GBBCT1.SEQ Genetic Sequence Data Bank
October 15 2020
NCBI-GenBank Flat File Release 240.0
Bacterial Sequences (Part 1)
101593 loci, 185853961 bases, from 101593 reported sequences
LOCUS AB000100 2992 bp DNA linear BCT 15-MAY-2009
DEFINITION Synechococcus elongatus PCC 7942 genes for intrinsic membrane
protein, malK-like protein, cyanase, complete cds.
ACCESSION AB000100
VERSION AB000100.1
KEYWORDS .
SOURCE Synechococcus elongatus PCC 7942 = FACHB-805
ORGANISM Synechococcus elongatus PCC 7942 = FACHB-805
Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae;
Synechococcus.
REFERENCE 1
AUTHORS Harano,Y., Suzuki,I., Maeda,S., Kaneko,T., Tabata,S. and Omata,T.
TITLE Identification and nitrogen regulation of the cyanase gene from the
cyanobacteria Synechocystis sp. strain PCC 6803 and Synechococcus
sp. strain PCC 7942
JOURNAL J. Bacteriol. 179 (18), 5744-5750 (1997)
PUBMED 9294430
REFERENCE 2 (bases 1 to 2992)
AUTHORS Omata,T.
TITLE Direct Submission
JOURNAL Submitted (26-DEC-1996) Contact:Tatsuo Omata School of Agricultural
Sciences, Nagoya University, Department of Applied Biological
Sciences; Chikusa, Nagoya, Aichi 464-01, Japan
COMMENT Bacteria and source DNA available from SRC AMB.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: Unicycler v. v0.4.7
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 176.1x
Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 10/16/2019 14:40:45
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 4,531
CDSs (total) :: 4,427
Genes (coding) :: 4,239
CDSs (with protein) :: 4,239
Genes (RNA) :: 104
rRNAs :: 8, 7, 7 (5S, 16S, 23S)
complete rRNAs :: 8, 7, 7 (5S, 16S, 23S)
tRNAs :: 71
ncRNAs :: 11
Pseudo Genes (total) :: 188
CDSs (without protein) :: 188
Pseudo Genes (ambiguous residues) :: 0 of 188
Pseudo Genes (frameshifted) :: 89 of 188
Pseudo Genes (incomplete) :: 108 of 188
Pseudo Genes (internal stop) :: 27 of 188
Pseudo Genes (multiple problems) :: 32 of 188
CRISPR Arrays :: 2
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2992
/organism="Synechococcus elongatus PCC 7942 = FACHB-805"
/mol_type="genomic DNA"
/strain="PCC 7942"
/db_xref="taxon:1140"
/clone_lib="constructed in pBluescript II KS-"
gene 121..912
/gene="cynB"
CDS 121..912
/gene="cynB"
/codon_start=1
/transl_table=11
/product="intrinsic membrane protein"
/protein_id="BAA21794.1"
/translation="MVRTPVPLYLRWAVSILSVLAFLAIWQIAAASGFLGKTFPGSLR
TLQDLFGWLSDPFFDNGPNDLGIGWNLLISLRRVAIGYLLATVVAIPLGIAIGMSALA
SSIFSPFVQLLKPVSPLAWLPIGLFLFRDSELTGVFVILISSLWPTLINTAFGVANVN
PDFLKVSQSLGASRWRTILKVILPAALPSIIAGMRISMGIAWLVIVAAEMLLGTGIGY
FIWNEWNNLSLPNIFSAIIIIGIVGILLDQGFRFLENQFSYAGNR"
gene 916..1785
/gene="cynD"
CDS 916..1785
/gene="cynD"
/codon_start=1
/transl_table=11
/product="malK-like protein"
/protein_id="BAA21795.1"
/translation="MISEAVPAKEETGQAQLLIEQVGKVFTVNSPSLLDRLRQRSPKR
YVALEDVNLTIASNTFVSIIGPSGCGKSTLLNLIAGLDLPTSGQILLDGQRIRSPGPD
RGIVFQNYALMPWMTALENVIFAVETARPNLSKSQAREVAREHLELVGLTKAADRYPG
QISGGMKQRVAIARALSIRPKLLLMDEPFGALDALTRGYLQEEVLRIWEANKLSVVLI
THSIDEALLLSDRIVVMSRGPRATIREVIDLPAVRPRQRSVIEEDERFVKIKLRLEEH
LFNETRAVEEASV"
gene 1
/gene="cynS"
CDS 1796..2236
/gene="cynS"
/EC_number="4.2.1.104"
/codon_start=1
/transl_table=11
/product="cyanase"
/protein_id="BAA19515.1"
/translation="MTSAITEQLLKAKKAKGITFTELEQLLGRDEVWIASVFYRQSTA
SPEEAEKLLTALGLDLALADELTTPPVKGCLEPVIPTDPLIYRFYEIMQVYGLPLKDV
IQEKFGDGIMSAIDFTLDVDKVEDPKGDRVKVTMCGKFLAYKKW"
BASE COUNT 67070277 a 48055043 c 48111528 g 67244164 t 18475410 n
ORIGIN
1 ctgcagccgc cgactgaaat ctatcgggaa gaaaagctcg cttacgacac ctttaacccg
61 caggatccag tcgcttacct cgcatctcaa aagcagaaat acgggagata aacacaactt
121 atggtgagaa ctcctgtacc gctttaccta cgttgggcgg tctccatcct cagcgtgctt
181 gcgttcctag ccatttggca aattgcggca gcttcaggat ttttaggcaa aacttttcct
241 ggctccctgc gcactttgca ggatttgttt ggatggcttt cagatccctt ctttgataac
301 ggccccaatg acttagggat tggctggaac ttactgatta gtttgcgtcg cgttgcgatc
361 ggctacctgc tggcaacagt tgttgcaatt cctttgggga ttgcaatcgg tatgtcggcg
421 ctagcttcca gtattttttc gccctttgtg caactcctga agccagtttc acctttggcc
481 tggttgccga ttggtctctt cttattccga gattcggaat tgacgggtgt ttttgtcatc
541 ctgatttcga gtctgtggcc aacgttgatc aacacagcgt ttggggtggc gaatgtcaat
601 cctgactttt tgaaggtttc gcaatctttg ggagctagtc gttggcgcac gattctgaag
661 gtgattctgc ccgcagcatt gcccagcatc atcgcgggaa tgcggatcag catgggcatt
721 gcttggctgg tcattgtggc agcagagatg ctgttgggaa caggaattgg ctatttcatt
781 tggaatgagt ggaataacct atcacttcct aatattttct cggccatcat catcattggg
841 attgttggca ttcttctcga ccaaggcttc cgttttcttg agaaccagtt ttcttacgca
901 ggcaaccgat aacccatgat ttctgaagct gtgccagcca aggaggagac agggcaggct
961 caattgctga ttgagcaagt tggcaaagtt tttactgtca attcaccttc tctcctcgat
1021 cgccttcgac agcgatcgcc caaacgctac gttgcattag aagatgtcaa cctcacgatc
1081 gcgtcgaaca catttgtctc gattattggc ccttcgggtt gtggtaaatc aacccttctc
1141 aacttgattg ctggccttga tttaccaacg tctggccaga ttctgctgga tggtcaacgc
1201 attcgatcgc cggggcccga tcgtggcatc gtcttccaga actatgccct gatgccctgg
1261 atgaccgcgc ttgagaatgt catctttgca gttgaaacgg cgcgcccaaa cctgagcaaa
1321 tcccaagctc gcgaagtggc acgagagcat ctagagctgg tgggtttaac caaagctgcc
1381 gatcgctatc cgggccaaat ttcagggggg atgaaacagc gcgtagcgat cgcccgtgcc
1441 ctctccatcc gtcctaagct cctgctgatg gatgaaccct ttggtgcctt ggatgccctc
1501 acccgtggct acctccaaga agaagtgctg cggatttggg aagccaacaa actgagtgtg
1561 gtgctcatca ctcacagtat tgatgaagca ctgctgcttt ccgatcgcat tgtggtgatg
1621 tctcgtgggc cacgagccac tattcgagaa gtgattgatt taccagccgt tcgccctcgg
1681 caacggtctg tgatcgaaga agatgagcgc ttcgtcaaaa tcaaattgcg ccttgaagaa
1741 catttgttca acgagacgcg tgcagttgaa gaagccagtg tttaggagaa ttccaatgac
1801 ctcagcgatt actgaacaac ttctgaaagc gaaaaaagca aagggaatta cctttactga
1861 gcttgagcaa ttacttggac gggatgaagt ctggattgcg agtgtgttct accgtcaatc
1921 tacggcttcg cctgaagagg cagaaaagct actgactgct ctgggcttag atctggcctt
1981 ggctgatgag ttgacgactc cgccggtcaa aggttgtttg gaaccggtga ttccaactga
2041 tccgttgatc tatcgcttct acgaaatcat gcaggtctat ggcttgcccc tcaaggatgt
2101 tatccaagaa aaatttggcg atggcatcat gagtgcgatt gatttcacct tagatgtcga
2161 taaggttgaa gatcccaaag gcgatcgcgt taaggtcacg atgtgtggca agttcttggc
2221 gtacaagaag tggtaaatac tgctagctaa tcaagcttca attcttgatc actggaggag
2281 agaggtttcc gcttctctcc ttttttgatt ggaattctct cattaactac gataccgctc
2341 tgcactgaat gacctcgagc tgagtggaag gtagctcgcc gccgatgata atggcgcctc
2401 tggaagagtt tggctaagct gtggacggcg atcgcggttg tctgtctgtg ctatgccctt
2461 gatttcggtg acccgactca agcttagaaa tgttctttat ttgccccgct tgcttccctt
2521 ctcgttgcga tcgacgtggc aggctaaacg agcgcctggc aatctgggcg ttaagctgtt
2581 gcaggatcgt aacttggctt tttggacctg caccgcttgg acggatgaag gagccatgcg
2641 tcggttcatg agagcggatg cccacgggca ggccatgacg aaattgatgg attggtgcag
2701 cgaagcctca gtcgtccatt ggcagcagga tcagccagac ttgcccgact ggcaggaagc
2761 tcaccgccgc atgatcgcgg aggggcgccc ctccaaagtg aaccatcctt cggctgccca
2821 ccaagcattt caggtcgatc cgccgcgccg cgcctagctc agtgactgcg gtcgcgctgt
2881 cttgcatcat tgcttcgctc taccagcccg gatcgctggc acagtccacg gtgatctcac
2941 ccgaggcggc atcgggaatc gcagtgatac agccgcagac tggctcgcca tc
//
LOCUS AB000106 1343 bp rRNA linear BCT 05-FEB-1999
DEFINITION Sphingomonas sp. 16S ribosomal RNA.
ACCESSION AB000106
VERSION AB000106.1
KEYWORDS 16S rRNA.
SOURCE Sphingomonas sp.
ORGANISM Sphingomonas sp.
Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingomonas.
REFERENCE 1 (bases 1 to 1343)
AUTHORS Iwabuchi,T.
TITLE Sphingomonas sp. VT1 16s rRNA
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1343)
AUTHORS Iwabuchi,T.
TITLE Direct Submission
JOURNAL Submitted (25-DEC-1996) Tokuro Iwabuchi, Shiseido Research Center,
Pharmaco Science Laboratories; 1050 Nippa, Kouhoku-ku, Yokohama,
Kanagawa 223, Japan (E-mail:PEH01461@niftyserve.or.jp,
Tel:+81-45-542-1337, Fax:+81-45-545-5931)
FEATURES Location/Qualifiers
source 1..1343
/organism="Sphingomonas sp."
/mol_type="rRNA"
/strain="VT1"
/db_xref="taxon:28214"
rRNA 1..1343
/product="16S ribosomal RNA"
mRNA join(<1261..1281,1283..1287,1290..1293,
1296..>1301)
/locus_tag="PP7435_CHR1-0252"
/label=lol_no_quotes_this_feature_is_not_real
/product="Hypothetical protein"
ORIGIN
1 ggaatctgcc cttgggttcg gaataacgtc tggaaacgga cgctaatacc ggatgatgac
61 gtaagtccaa agatttatcg cccagggatg agcccgcgta ggattagcta gttggtgagg
121 taaaggctca ccaaggcgac gatccttagc tggtctgaga ggatgatcag ccacactggg
181 actgagacac ggcccagact cctacgggag gcagcagtag ggaatattgg acaatgggcg
241 aaagcctgat ccagcaatgc cgcgtgagtg atgaaggcct tagggttgta aagctctttt
301 acccgggatg ataatgacag taccgggaga ataagccccg gctaactccg tgccagcagc
361 cgcggtaata cggagggggc tagcgttgtt cggaattact gggcgtaaag cgcacgtagg
421 cggcgattta agtcagaggt gaaagcccgg ggctcaaccc cggaatagcc tttgagactg
481 gattgcttga atccgggaga ggtgagtgga attccgagtg tagaggtgaa attcgtagat
541 attcggaaga acaccagtgg cgaaggcgga tcactggacc ggcattgacg ctgaggtgcg
601 aaagcgtggg gagcaaacag gattagatac cctggtagtc cacgccgtaa acgatgataa
661 ctagctgctg gggctcatgg agtttcagtg gcgcagctaa cgcattaagt tatccgcctg
721 gggagtacgg tcgcaagatt aaaactcaaa ggaattgacg ggggcctgca caagcggtgg
781 agcatgtggt ttaattcgaa gcaacgcgca gaaccttacc aacgtttgac atccctagta
841 tggttaccag agatggtttc cttcagttcg gctggctagg tgacaggtgc tgcatggctg
901 tcgtcagctc gtgtcgtgag atgttgggtt aagtcccgca acgagcgcaa ccctcgcctt
961 tagttgccat cattcagttg ggtactctaa aggaaccgcc ggtgataagc cggaggaagg
1021 tggggatgac gtcaagtcct catggccctt acgcgttggg ctacacacgt gctacaatgg
1081 cgactacagt gggcagctat ctcgcgagag tgcgctaatc tccaaaagtc gtctcagttc
1141 ggatcgttct ctgcaactcg agagcgtgaa ggcggaatcg ctagtaatcg cggatcagca
1201 tgccgcggtg aatacgtccc caggtcttgt acacaccgcc cgtcacacca tgggagttgg
1261 tttcacccga aggcgctgcg ctaactcgca agagaggcag gcgaccacgg tgggatcagc
1321 gactgggtga gtcgtacagg tgc
//