forked from mckinsel/cellranger_clean
-
Notifications
You must be signed in to change notification settings - Fork 1
/
test_run.out
466 lines (456 loc) · 46.3 KB
/
test_run.out
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
Martian Runtime - 'v3.2.5'
2020-03-13 02:18:34 [build ] Built with Go version go1.11
2020-03-13 02:18:34 [cmdline] mrp __tiny.mro tiny
2020-03-13 02:18:34 [pid ] 53
2020-03-13 02:18:34 [environ] TENX_PRODUCT=cellranger
2020-03-13 02:18:34 [environ] HOSTNAME=cc241b4b6b87
2020-03-13 02:18:34 [environ] TENX_VERSION=3.0.2.9001
2020-03-13 02:18:34 [environ] PWD=/root
2020-03-13 02:18:34 [environ] HOME=/root
2020-03-13 02:18:34 [environ] TENX_SUBCMD=testrun
2020-03-13 02:18:34 [environ] TERM=xterm
2020-03-13 02:18:34 [environ] TENX_COPYRIGHT=Copyright (c) 2018 10x Genomics, Inc. All rights reserved.
2020-03-13 02:18:34 [environ] TENX_SCRIPTDIR=/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/bin
2020-03-13 02:18:34 [environ] SHLVL=3
2020-03-13 02:18:34 [environ] PYTHONPATH=/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/lib/python:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/tenkit/lib/python:/martian/adapters/python:
2020-03-13 02:18:34 [environ] PATH=/cellranger-3.0.2.9001:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/bin/:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/lib/bin:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/tenkit/bin/:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/tenkit/lib/bin:/martian/bin/:/.cargo/bin:/root/.cargo/bin/:/go/bin:/usr/local/go/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
2020-03-13 02:18:34 [environ] TENX_BANNER=cellranger testrun (3.0.2.9001)
Copyright (c) 2018 10x Genomics, Inc. All rights reserved.
-------------------------------------------------------------------------------
2020-03-13 02:18:34 [environ] _=/martian/bin/mrp
2020-03-13 02:18:34 [environ] MROPATH=/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/mro/:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/tenkit/mro/
2020-03-13 02:18:34 [version] MRO Version=3.0.2.9001
2020-03-13 02:18:34 [options] --jobmode=local
2020-03-13 02:18:34 [options] --maxjobs=0
2020-03-13 02:18:34 [options] --jobinterval=0
2020-03-13 02:18:34 [options] --vdrmode=rolling
2020-03-13 02:18:34 [options] --stackvars=false
2020-03-13 02:18:34 [options] --zip=false
2020-03-13 02:18:34 [options] --limit-loadavg=false
2020-03-13 02:18:34 [options] --noexit=false
2020-03-13 02:18:34 [options] --nopreflight=false
2020-03-13 02:18:34 [jobmngr] Job config = /martian/jobmanagers/config.json
2020-03-13 02:18:34 [jobmngr] Using 24 logical cores available on system.
2020-03-13 02:18:34 [jobmngr] Using 170 GB, 90% of system memory.
2020-03-13 02:18:34 [filesys] Pipestance path /root/tiny
2020-03-13 02:18:34 [filesys] Pipestance filesystem type ext
2020-03-13 02:18:34 [filesys] 637 GB and 81,981,946 inodes available.
2020-03-13 02:18:34 [filesys] Pipestance filesystem ext4 mount options: rw,relatime,rw,data=ordered
2020-03-13 02:18:34 [filesys] Bin path /martian/bin
2020-03-13 02:18:34 [filesys] Bin filesystem type ext
2020-03-13 02:18:34 [filesys] Bin filesystem ext4 mount options: rw,relatime,rw,data=ordered
Serving UI at http://cc241b4b6b87:34145?auth=2U27OAsV6Payj7Rc1JLR9TNhk0p6THRCADp9R6AFjTE
Running preflight checks (please wait)...
2020-03-13 02:18:34 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF
2020-03-13 02:18:34 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main
2020-03-13 02:18:36 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF
2020-03-13 02:18:36 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2020-03-13 02:18:36 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL.fork0.chnk0.main
2020-03-13 02:18:36 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2020-03-13 02:18:36 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT.fork0.chnk0.main
2020-03-13 02:18:37 [runtime] (failed) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
[error] On machine: cc241b4b6b87, specified FASTQ folder does not exist: /cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/bin/../../../cellranger-tiny-fastq/3.0.0
2020-03-13 02:18:37 Shutting down.
Waiting 6 seconds for UI to do final refresh.
2020-03-13 02:18:37 [jobmngr] Highest memory usage observed: {
"rss": 15003648,
"shared": 9236480,
"vmem": 1716240384,
"text": 4349952,
"stack": 285638656,
"proc_count": 24
}
Martian Runtime - 'v3.2.5'
2020-03-13 03:09:50 [build ] Built with Go version go1.11
2020-03-13 03:09:50 [cmdline] mrp __tiny.mro tiny
2020-03-13 03:09:50 [pid ] 459
2020-03-13 03:09:50 [environ] TENX_PRODUCT=cellranger
2020-03-13 03:09:50 [environ] HOSTNAME=cc241b4b6b87
2020-03-13 03:09:50 [environ] TENX_VERSION=3.0.2.9001
2020-03-13 03:09:50 [environ] PWD=/root
2020-03-13 03:09:50 [environ] HOME=/root
2020-03-13 03:09:50 [environ] TENX_SUBCMD=testrun
2020-03-13 03:09:50 [environ] TERM=xterm
2020-03-13 03:09:50 [environ] TENX_COPYRIGHT=Copyright (c) 2018 10x Genomics, Inc. All rights reserved.
2020-03-13 03:09:50 [environ] TENX_SCRIPTDIR=/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/bin
2020-03-13 03:09:50 [environ] SHLVL=3
2020-03-13 03:09:50 [environ] PYTHONPATH=/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/lib/python:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/tenkit/lib/python:/martian/adapters/python:
2020-03-13 03:09:50 [environ] PATH=/cellranger-3.0.2.9001:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/bin/:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/lib/bin:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/tenkit/bin/:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/tenkit/lib/bin:/martian/bin/:/.cargo/bin:/root/.cargo/bin/:/go/bin:/usr/local/go/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
2020-03-13 03:09:50 [environ] TENX_BANNER=cellranger testrun (3.0.2.9001)
Copyright (c) 2018 10x Genomics, Inc. All rights reserved.
-------------------------------------------------------------------------------
2020-03-13 03:09:50 [environ] _=/martian/bin/mrp
2020-03-13 03:09:50 [environ] MROPATH=/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/mro/:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/tenkit/mro/
2020-03-13 03:09:50 [version] MRO Version=3.0.2.9001
2020-03-13 03:09:50 [options] --jobmode=local
2020-03-13 03:09:50 [options] --maxjobs=0
2020-03-13 03:09:50 [options] --jobinterval=0
2020-03-13 03:09:50 [options] --vdrmode=rolling
2020-03-13 03:09:50 [options] --stackvars=false
2020-03-13 03:09:50 [options] --zip=false
2020-03-13 03:09:50 [options] --limit-loadavg=false
2020-03-13 03:09:50 [options] --noexit=false
2020-03-13 03:09:50 [options] --nopreflight=false
2020-03-13 03:09:50 [jobmngr] Job config = /martian/jobmanagers/config.json
2020-03-13 03:09:50 [jobmngr] Using 24 logical cores available on system.
2020-03-13 03:09:50 [jobmngr] Using 170 GB, 90% of system memory.
2020-03-13 03:09:50 [runtime] Reattaching in local mode.
2020-03-13 03:09:50 [filesys] Pipestance path /root/tiny
2020-03-13 03:09:50 [filesys] Pipestance filesystem type ext
2020-03-13 03:09:50 [filesys] 646 GB and 82,167,967 inodes available.
2020-03-13 03:09:50 [filesys] Pipestance filesystem ext4 mount options: rw,relatime,rw,data=ordered
2020-03-13 03:09:50 [filesys] Bin path /martian/bin
2020-03-13 03:09:50 [filesys] Bin filesystem type ext
2020-03-13 03:09:50 [filesys] Bin filesystem ext4 mount options: rw,relatime,rw,data=ordered
Serving UI at http://cc241b4b6b87:42897?auth=llhQLKcIoqir4xQtFQ5EQO5tOPgjYpvbuOR0UFWypf8
2020-03-13 03:09:50 [runtime] (reset-partial) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT.fork0.chnk0
2020-03-13 03:09:50 [runtime] (reset-partial) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL.fork0.chnk0
2020-03-13 03:09:50 [runtime] Found orphaned local stage: ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2020-03-13 03:09:50 [runtime] Found orphaned local stage: ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2020-03-13 03:09:50 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2020-03-13 03:09:50 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT.fork0.chnk0.main
2020-03-13 03:09:50 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2020-03-13 03:09:50 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL.fork0.chnk0.main
2020-03-13 03:09:51 [runtime] (failed) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
[error] On machine: cc241b4b6b87, specified FASTQ folder does not exist: /cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/bin/../../../cellranger-tiny-fastq/3.0.0
2020-03-13 03:09:51 Shutting down.
Waiting 6 seconds for UI to do final refresh.
2020-03-13 03:09:51 [jobmngr] Highest memory usage observed: {
"rss": 108032000,
"shared": 44130304,
"vmem": 2910666752,
"text": 4857856,
"stack": 1849237504,
"proc_count": 40
}
Martian Runtime - 'v3.2.5'
2020-03-13 03:10:49 [build ] Built with Go version go1.11
2020-03-13 03:10:49 [cmdline] mrp __tiny.mro tiny
2020-03-13 03:10:49 [pid ] 786
2020-03-13 03:10:49 [environ] TENX_PRODUCT=cellranger
2020-03-13 03:10:49 [environ] HOSTNAME=cc241b4b6b87
2020-03-13 03:10:49 [environ] TENX_VERSION=3.0.2.9001
2020-03-13 03:10:49 [environ] PWD=/root
2020-03-13 03:10:49 [environ] HOME=/root
2020-03-13 03:10:49 [environ] TENX_SUBCMD=testrun
2020-03-13 03:10:49 [environ] TERM=xterm
2020-03-13 03:10:49 [environ] TENX_COPYRIGHT=Copyright (c) 2018 10x Genomics, Inc. All rights reserved.
2020-03-13 03:10:49 [environ] TENX_SCRIPTDIR=/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/bin
2020-03-13 03:10:49 [environ] SHLVL=3
2020-03-13 03:10:49 [environ] PYTHONPATH=/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/lib/python:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/tenkit/lib/python:/martian/adapters/python:
2020-03-13 03:10:49 [environ] PATH=/cellranger-3.0.2.9001:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/bin/:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/lib/bin:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/tenkit/bin/:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/tenkit/lib/bin:/martian/bin/:/.cargo/bin:/root/.cargo/bin/:/go/bin:/usr/local/go/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
2020-03-13 03:10:49 [environ] TENX_BANNER=cellranger testrun (3.0.2.9001)
Copyright (c) 2018 10x Genomics, Inc. All rights reserved.
-------------------------------------------------------------------------------
2020-03-13 03:10:49 [environ] _=/martian/bin/mrp
2020-03-13 03:10:49 [environ] MROPATH=/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/mro/:/cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/tenkit/mro/
2020-03-13 03:10:49 [version] MRO Version=3.0.2.9001
2020-03-13 03:10:49 [options] --jobmode=local
2020-03-13 03:10:49 [options] --maxjobs=0
2020-03-13 03:10:49 [options] --jobinterval=0
2020-03-13 03:10:49 [options] --vdrmode=rolling
2020-03-13 03:10:49 [options] --stackvars=false
2020-03-13 03:10:49 [options] --zip=false
2020-03-13 03:10:49 [options] --limit-loadavg=false
2020-03-13 03:10:49 [options] --noexit=false
2020-03-13 03:10:49 [options] --nopreflight=false
2020-03-13 03:10:49 [jobmngr] Job config = /martian/jobmanagers/config.json
2020-03-13 03:10:49 [jobmngr] Using 24 logical cores available on system.
2020-03-13 03:10:49 [jobmngr] Using 170 GB, 90% of system memory.
2020-03-13 03:10:50 [runtime] Reattaching in local mode.
2020-03-13 03:10:50 [filesys] Pipestance path /root/tiny
2020-03-13 03:10:50 [filesys] Pipestance filesystem type ext
2020-03-13 03:10:50 [filesys] 646 GB and 82,167,965 inodes available.
2020-03-13 03:10:50 [filesys] Pipestance filesystem ext4 mount options: rw,relatime,rw,data=ordered
2020-03-13 03:10:50 [filesys] Bin path /martian/bin
2020-03-13 03:10:50 [filesys] Bin filesystem type ext
2020-03-13 03:10:50 [filesys] Bin filesystem ext4 mount options: rw,relatime,rw,data=ordered
Serving UI at http://cc241b4b6b87:34293?auth=d0_DIV2Bs2UoyIs6wjb09BQ_rS7gKt6O-oSNdlX4-8o
2020-03-13 03:10:50 [runtime] (reset-partial) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT.fork0.chnk0
2020-03-13 03:10:50 [runtime] (reset-partial) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL.fork0.chnk0
2020-03-13 03:10:50 [runtime] Found orphaned local stage: ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2020-03-13 03:10:50 [runtime] Found orphaned local stage: ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2020-03-13 03:10:50 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2020-03-13 03:10:50 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT.fork0.chnk0.main
2020-03-13 03:10:50 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2020-03-13 03:10:50 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL.fork0.chnk0.main
2020-03-13 03:10:51 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2020-03-13 03:10:51 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2020-03-13 03:10:51 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION
2020-03-13 03:10:51 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main
2020-03-13 03:10:51 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY
2020-03-13 03:10:51 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main
2020-03-13 03:10:51 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES
2020-03-13 03:10:51 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main
2020-03-13 03:10:51 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION
2020-03-13 03:10:51 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES
2020-03-13 03:10:59 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY
2020-03-13 03:10:59 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS
2020-03-13 03:10:59 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main
2020-03-13 03:11:00 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS
2020-03-13 03:11:00 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2020-03-13 03:11:00 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split
2020-03-13 03:11:00 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2020-03-13 03:11:00 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split
2020-03-13 03:11:00 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2020-03-13 03:11:00 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main
2020-03-13 03:11:00 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk1.main
2020-03-13 03:11:00 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2020-03-13 03:11:00 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join
2020-03-13 03:11:00 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2020-03-13 03:11:00 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2020-03-13 03:11:00 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split
2020-03-13 03:11:00 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2020-03-13 03:11:00 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join
2020-03-13 03:11:01 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2020-03-13 03:11:01 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk0.main
2020-03-13 03:11:01 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk1.main
2020-03-13 03:11:01 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2020-03-13 03:12:27 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2020-03-13 03:12:27 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join
2020-03-13 03:13:33 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2020-03-13 03:13:33 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2020-03-13 03:13:33 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split
2020-03-13 03:13:34 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2020-03-13 03:13:34 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk0.main
2020-03-13 03:13:34 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk1.main
2020-03-13 03:13:35 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2020-03-13 03:13:35 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.join
2020-03-13 03:13:35 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2020-03-13 03:13:35 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2020-03-13 03:13:35 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.split
2020-03-13 03:13:36 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2020-03-13 03:13:36 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk0.main
2020-03-13 03:13:36 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk1.main
2020-03-13 03:13:47 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2020-03-13 03:13:47 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.join
2020-03-13 03:13:48 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2020-03-13 03:13:48 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2020-03-13 03:13:48 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.split
2020-03-13 03:13:49 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2020-03-13 03:13:49 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk0.main
2020-03-13 03:13:49 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk1.main
2020-03-13 03:14:14 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2020-03-13 03:14:14 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.join
2020-03-13 03:14:20 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2020-03-13 03:14:20 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2020-03-13 03:14:20 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.split
2020-03-13 03:14:21 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2020-03-13 03:14:21 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk0.main
2020-03-13 03:14:21 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk1.main
2020-03-13 03:14:30 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2020-03-13 03:14:30 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.join
2020-03-13 03:14:31 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2020-03-13 03:14:31 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2020-03-13 03:14:31 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.split
2020-03-13 03:14:32 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk00.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk01.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk02.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk03.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk04.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk05.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk06.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk07.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk08.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk09.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk10.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk11.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk12.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk13.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk14.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk15.main
2020-03-13 03:14:32 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk16.main
2020-03-13 03:14:35 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2020-03-13 03:14:35 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.join
2020-03-13 03:14:36 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2020-03-13 03:14:36 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2020-03-13 03:14:36 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.split
2020-03-13 03:14:36 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2020-03-13 03:14:36 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk0.main
2020-03-13 03:14:45 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2020-03-13 03:14:45 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.join
2020-03-13 03:14:45 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2020-03-13 03:14:45 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2020-03-13 03:14:45 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.split
2020-03-13 03:14:45 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2020-03-13 03:14:45 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.split
2020-03-13 03:14:46 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2020-03-13 03:14:46 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk0.main
2020-03-13 03:14:46 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2020-03-13 03:14:46 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk0.main
2020-03-13 03:14:55 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2020-03-13 03:14:55 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.join
2020-03-13 03:14:57 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2020-03-13 03:15:34 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2020-03-13 03:15:34 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.join
2020-03-13 03:16:09 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2020-03-13 03:16:09 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2020-03-13 03:16:09 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.split
2020-03-13 03:16:10 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2020-03-13 03:16:10 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.join
2020-03-13 03:17:59 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2020-03-13 03:17:59 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2020-03-13 03:17:59 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT.fork0.chnk0.main
2020-03-13 03:17:59 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2020-03-13 03:17:59 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.split
2020-03-13 03:18:00 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2020-03-13 03:18:00 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2020-03-13 03:18:00 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split
2020-03-13 03:18:00 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2020-03-13 03:18:00 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk0.main
2020-03-13 03:18:01 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2020-03-13 03:18:01 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join
2020-03-13 03:18:02 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2020-03-13 03:18:02 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2020-03-13 03:18:02 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split
2020-03-13 03:18:02 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2020-03-13 03:18:02 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split
2020-03-13 03:18:02 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA
2020-03-13 03:18:02 [runtime] (disabled) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA
2020-03-13 03:18:02 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2020-03-13 03:18:02 [runtime] (disabled) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2020-03-13 03:18:02 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2020-03-13 03:18:02 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join
2020-03-13 03:18:02 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2020-03-13 03:18:02 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main
2020-03-13 03:18:03 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2020-03-13 03:18:04 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2020-03-13 03:18:04 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join
2020-03-13 03:18:04 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2020-03-13 03:18:05 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT
2020-03-13 03:18:05 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main
2020-03-13 03:18:05 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT
2020-03-13 03:18:05 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2020-03-13 03:18:05 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split
2020-03-13 03:18:05 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2020-03-13 03:18:05 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split
2020-03-13 03:18:05 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2020-03-13 03:18:05 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split
2020-03-13 03:18:06 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2020-03-13 03:18:06 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main
2020-03-13 03:18:06 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2020-03-13 03:18:06 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main
2020-03-13 03:18:06 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2020-03-13 03:18:06 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main
2020-03-13 03:18:06 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main
2020-03-13 03:18:06 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main
2020-03-13 03:18:06 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main
2020-03-13 03:18:06 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main
2020-03-13 03:18:06 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main
2020-03-13 03:18:06 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main
2020-03-13 03:18:06 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main
2020-03-13 03:18:06 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main
2020-03-13 03:18:08 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2020-03-13 03:18:08 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join
2020-03-13 03:18:09 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2020-03-13 03:18:09 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join
2020-03-13 03:18:10 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2020-03-13 03:18:13 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2020-03-13 03:18:13 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join
2020-03-13 03:18:13 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2020-03-13 03:18:13 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2020-03-13 03:18:13 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split
2020-03-13 03:18:14 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2020-03-13 03:18:14 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2020-03-13 03:18:14 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main
2020-03-13 03:18:15 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2020-03-13 03:18:15 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join
2020-03-13 03:18:16 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2020-03-13 03:18:16 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2020-03-13 03:18:16 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main
2020-03-13 03:18:17 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2020-03-13 03:18:17 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2020-03-13 03:18:17 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split
2020-03-13 03:18:18 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2020-03-13 03:18:18 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main
2020-03-13 03:18:18 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main
2020-03-13 03:18:18 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main
2020-03-13 03:18:18 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main
2020-03-13 03:18:18 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main
2020-03-13 03:18:18 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main
2020-03-13 03:18:18 [jobmngr] Need 4 threads to start the next job (3 available). Waiting for jobs to complete.
2020-03-13 03:18:18 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main
2020-03-13 03:18:18 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main
2020-03-13 03:18:18 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main
2020-03-13 03:18:18 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main
2020-03-13 03:18:19 [jobmngr] Need 4 threads to start the next job (3 available). Waiting for jobs to complete.
2020-03-13 03:18:19 [jobmngr] Need 4 threads to start the next job (3 available). Waiting for jobs to complete.
2020-03-13 03:18:19 [jobmngr] Need 4 threads to start the next job (3 available). Waiting for jobs to complete.
2020-03-13 03:18:19 [jobmngr] Need 4 threads to start the next job (3 available). Waiting for jobs to complete.
2020-03-13 03:18:21 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2020-03-13 03:18:21 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join
2020-03-13 03:18:22 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2020-03-13 03:18:22 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2020-03-13 03:18:22 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split
2020-03-13 03:18:22 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2020-03-13 03:18:22 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main
2020-03-13 03:18:23 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2020-03-13 03:18:23 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join
2020-03-13 03:18:24 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2020-03-13 03:18:56 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2020-03-13 03:18:56 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join
2020-03-13 03:19:02 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2020-03-13 03:19:02 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2020-03-13 03:19:02 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split
2020-03-13 03:19:03 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2020-03-13 03:19:03 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main
2020-03-13 03:19:07 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2020-03-13 03:19:07 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join
2020-03-13 03:19:08 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2020-03-13 03:19:08 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2020-03-13 03:19:08 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split
2020-03-13 03:19:09 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2020-03-13 03:19:09 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main
2020-03-13 03:19:10 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2020-03-13 03:19:10 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join
2020-03-13 03:19:11 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2020-03-13 03:19:11 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS
2020-03-13 03:19:11 [runtime] (disabled) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS
2020-03-13 03:19:11 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2020-03-13 03:19:11 [runtime] (disabled) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2020-03-13 03:19:11 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS
2020-03-13 03:19:11 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.split
2020-03-13 03:19:11 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2020-03-13 03:19:11 [runtime] (disabled) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2020-03-13 03:19:11 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2020-03-13 03:19:11 [runtime] (disabled) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2020-03-13 03:19:11 [runtime] (disabled) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER
2020-03-13 03:19:12 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS
2020-03-13 03:19:12 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main
2020-03-13 03:19:23 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS
2020-03-13 03:19:23 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.join
2020-03-13 03:19:24 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS
2020-03-13 03:19:24 [runtime] (ready) ID.tiny.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2020-03-13 03:19:24 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split
2020-03-13 03:19:25 [runtime] (split_complete) ID.tiny.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2020-03-13 03:19:25 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main
2020-03-13 03:19:26 [runtime] (chunks_complete) ID.tiny.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2020-03-13 03:19:26 [runtime] (run:local) ID.tiny.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join
2020-03-13 03:19:26 [runtime] (join_complete) ID.tiny.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2020-03-13 03:19:26 [runtime] VDR killed 369 files, 1.1 GB.
Outputs:
- Run summary HTML: /root/tiny/outs/web_summary.html
- Run summary CSV: /root/tiny/outs/metrics_summary.csv
- BAM: /root/tiny/outs/possorted_genome_bam.bam
- BAM index: /root/tiny/outs/possorted_genome_bam.bam.bai
- Filtered feature-barcode matrices MEX: /root/tiny/outs/filtered_feature_bc_matrix
- Filtered feature-barcode matrices HDF5: /root/tiny/outs/filtered_feature_bc_matrix.h5
- Unfiltered feature-barcode matrices MEX: /root/tiny/outs/raw_feature_bc_matrix
- Unfiltered feature-barcode matrices HDF5: /root/tiny/outs/raw_feature_bc_matrix.h5
- Secondary analysis output CSV: /root/tiny/outs/analysis
- Per-molecule read information: /root/tiny/outs/molecule_info.h5
- CRISPR-specific analysis: null
- Loupe Cell Browser file: /root/tiny/outs/cloupe.cloupe
2020-03-13 03:19:27 [perform] Serializing pipestance performance data.
Waiting 6 seconds for UI to do final refresh.
Pipestance completed successfully!
2020-03-13 03:19:33 Shutting down.
2020-03-13 03:19:33 [jobmngr] Highest memory usage observed: {
"rss": 4409790464,
"shared": 700841984,
"vmem": 44292685824,
"text": 77725696,
"stack": 29328523264,
"proc_count": 664
}