From 3f4842f6adcbeb1f340ef1b3bf333e8d86ade4dd Mon Sep 17 00:00:00 2001
From: TomKellyGenetics <tomkellygenetics@gmail.com>
Date: Fri, 5 Jul 2024 11:19:44 +1200
Subject: [PATCH] CRAN checks

---
 R/annotation.R      |  2 +-
 cran-comments.md    | 32 +++++++++++++++++++++++++-------
 man/add_outliers.Rd |  2 +-
 3 files changed, 27 insertions(+), 9 deletions(-)

diff --git a/R/annotation.R b/R/annotation.R
index 8dd6499..121840c 100644
--- a/R/annotation.R
+++ b/R/annotation.R
@@ -86,7 +86,7 @@ add_labels <- function(variable, categories, cex = par()$cex, col = par()$fg, he
 #' @keywords plot graphics violin annotation
 #'
 #' @usage add_outliers(variable, categories, cutoff = 3,
-#' fill = par()$bg, col = par()$fg, bars = par()$fg,
+#' fill = par()$bg, col = par()$fg, bars = par()$fg, lwd = par()$lwd,
 #' verbose = FALSE)
 #' @rdname add_outliers
 #' @importFrom stats sd
diff --git a/cran-comments.md b/cran-comments.md
index 4a07696..a28c8aa 100755
--- a/cran-comments.md
+++ b/cran-comments.md
@@ -1,4 +1,5 @@
 ## Test environments
+* Windows 10 desktop R 4.3.3
 * ubuntu 14.04 (on travis-ci), R 3.6.3, 4.0.0, dev
 * MacOS 10.13.6 (on travis-ci), 4.0.0
 * ubuntu 14.04 (on circle-ci), R 3.6.1
@@ -10,21 +11,38 @@
 * CentOS 7 R 4.1.2
 * CentOS 7 R 4.2.1 
 
-## R CMD check results
+── R CMD check results ───────────────────── vioplot 0.5.0 ────
+Duration: 59.3s
 
-── R CMD check results ────────────── vioplot 0.4.0.9001 ────
-Duration: 40s
-
-0 errors ✓ | 0 warnings ✓ | 0 notes ✓
+0 errors ✔ | 0 warnings ✔ | 0 notes ✔
 
 R CMD check succeeded
 
 ## Updates
-Minor bug fixes. Significant changes to documentation.
 
-New feature for histograms.
+New features (pilot release with limited API and documentation)
+
+- adds function to annotate sample size per group
+- adds function to plot outliers  by standard deviation magnitude threshold
+
+Updates to Violin plot
+
+- enable angled axis labels with srt.axis
+- pass axis aesthetic parameters from formula input
+
+Documentation
+
+- add demo of histogram plots (#19 by @Jadamso)
+- updated vignettes for split histograms (#19 by @Jadamso) 
+- expands vignettes for annotated violins and annotated split violins
+
+Bug fixes
+
+- formula input detects group names but avoids overlapping axis labels
 
 All changes expected to be backwards compatible without affecting reverse dependencies.
+New experimental features are fully-documented with separate functions to
+avoid problems with existing functions.
 
 #NOTE
 None.
diff --git a/man/add_outliers.Rd b/man/add_outliers.Rd
index ac19ec6..0cc015c 100644
--- a/man/add_outliers.Rd
+++ b/man/add_outliers.Rd
@@ -5,7 +5,7 @@
 \title{Annotated Violin Plot}
 \usage{
 add_outliers(variable, categories, cutoff = 3,
-fill = par()$bg, col = par()$fg, bars = par()$fg,
+fill = par()$bg, col = par()$fg, bars = par()$fg, lwd = par()$lwd,
 verbose = FALSE)
 }
 \arguments{