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layout venue address country language latitude longitude humandate humantime startdate enddate instructor helper email collaborative_notes eventbrite
workshop
University of Arizona
Please check your email for the workshop location
en
en
30.231901
88.9495000
Feb 15-16, 2020
8:30 am - 5:00 pm
2020-02-15
2020-02-16
Drake Asberry
Nathalia Graf Gachet
Uwe Hilgert
Blake Joyce
Ryan Bartelme
Alex Bigelow
Gustavo de Oliveira Almeida
Noah Giebink
Fayu Jiang
Artin Majdi
Albert Reiber
Zhixue Shu
Heidi Steiner
Travis Struck
Isabella Viney
Jeremy Weiss
Derrick Yoo
hilgert@bio5.org

Apply for the workshop at http://bit.ly/35NErJo.

{% if site.carpentry == "dc" or site.carpentry == "dc" %} {% unless site.curriculum == "dc-ecology" or site.curriculum == "dc-genomics" or site.curriculum == "dc-socsci" or site.curriculum == "dc-geospatial" %}

It looks like you are setting up a website for a Data Carpentry curriculum but you haven't specified the curriculum type in the _config.yml file (current value in _config.yml: "{{ site.curriculum }}", possible values: dc-ecology, dc-genomics, dc-socsci, or dc-geospatial). After editing this file, you need to run make serve again to see the changes reflected.
{% endunless %} {% endif %}

{% comment %} EVENTBRITE

This block includes the Eventbrite registration widget if 'eventbrite' has been set in the header. You can delete it if you are not using Eventbrite, or leave it in, since it will not be displayed if the 'eventbrite' field in the header is not set. {% endcomment %} {% if page.eventbrite %}

<iframe src="https://www.eventbrite.com/tickets-external?eid={{page.eventbrite}}&ref=etckt" frameborder="0" width="100%" height="280px" scrolling="auto"> </iframe> {% endif %}

General Information

{% comment %} INTRODUCTION

Edit the general explanatory paragraph below if you want to change the pitch. {% endcomment %} {% if site.carpentry == "swc" %} {% include swc/intro.html %} {% elsif site.carpentry == "dc" %} {% include dc/intro.html %} {% elsif site.carpentry == "lc" %} {% include lc/intro.html %} {% endif %}

{% comment %} AUDIENCE

Explain who your audience is. (In particular, tell readers if the workshop is only open to people from a particular institution. {% endcomment %} {% if site.carpentry == "swc" %} {% include swc/who.html %} {% elsif site.carpentry == "dc" %} {% include dc/who.html %} {% elsif site.carpentry == "lc" %} {% include lc/who.html %} {% endif %}

{% comment %} LOCATION

This block displays the address and links to maps showing directions if the latitude and longitude of the workshop have been set. You can use https://itouchmap.com/latlong.html to find the lat/long of an address. {% endcomment %} {% if page.latitude and page.longitude %}

Where: {{page.address}}! Get directions with OpenStreetMap or Google Maps.

{% endif %}

{% comment %} DATE

This block displays the date and links to Google Calendar. {% endcomment %} {% if page.humandate %}

When: {{page.humandate}}. {% include workshop_calendar.html %}

{% endif %}

{% comment %} SPECIAL REQUIREMENTS

Modify the block below if there are any special requirements. {% endcomment %}

Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed (listed below).

{% comment%} CODE OF CONDUCT {% endcomment %}

Code of Conduct: Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.

{% comment %} ACCESSIBILITY

Modify the block below if there are any barriers to accessibility or special instructions. {% endcomment %}

Accessibility: We are committed to making this workshop accessible to everybody. The workshop organizers have checked that:

  • The room is wheelchair / scooter accessible.
  • Accessible restrooms are available.

If we can help making learning easier for you (e.g. sign-language interpreters, lactation facilities) please get in touch (using contact details below) and we will attempt to provide them.

{% comment %} CONTACT EMAIL ADDRESS

Display the contact email address set in the configuration file. {% endcomment %}

Contact: Please email {% if page.email %} {% for email in page.email %} {% if forloop.last and page.email.size > 1 %} or {% else %} {% unless forloop.first %} , {% endunless %} {% endif %} {{email}} {% endfor %} {% else %} to-be-announced {% endif %} for more information.

Information about the Tucson Rodeo Week 2020

{% comment %} SURVEYS - DO NOT EDIT SURVEY LINKS {% endcomment %}

Surveys

Please be sure to complete these surveys before and after the workshop.

Pre-workshop Survey

Post-workshop Survey

{% comment %} SCHEDULE

Show the workshop's schedule. Edit the items and times in the table to match your plans. You may also want to change 'Day 1' and 'Day 2' to be actual dates or days of the week. {% endcomment %}

Schedule

Saturday February 15

08:30 Access and navigate the command line / Bash Shell
10:30 Coffee Break
10:45 Manage data with git/GitHub
12:00 Lunch Break*
13:00 Analyze data in the Bash Shell
14:45 Coffee Break
15:00 Analyze scientific data with Python
17:00 End of Day

Sunday February 16

08:30 Analyze scientific data with Python and git/GitHub
10:30 Coffee Break
11:00 Analyze scientific data with Python and git/GitHub, cont.
12:00 Lunch Break*
13:00 Analyze scientific data with Python and git/GitHub, cont.
14:45 Coffee Break
15:00 Analyze scientific data with Python and git/GitHub, cont.
17:00 End of Day

* Click for a list and map of nearby eateries.

Schedule subject to change if necessary.

{% comment %} Collaborative Notes

If you want to use an Etherpad, go to

http://pad.carpentries.org/YYYY-MM-DD-site

where 'YYYY-MM-DD-site' is the identifier for your workshop, e.g., '2015-06-10-esu'. {% endcomment %} {% if page.collaborative_notes %}

We will use this collaborative document for chatting, taking notes, and sharing URLs and bits of code.

{% endif %}

{% comment %} SYLLABUS

Show what topics will be covered.

  1. If your workshop is R rather than Python, remove the comment around that section and put a comment around the Python section.
  2. Some workshops will delete SQL.
  3. Please make sure the list of topics is synchronized with what you intend to teach.
  4. You may need to move the div's with class="col-md-6" around inside the div's with class="row" to balance the multi-column layout.

This is one of the places where people frequently make mistakes, so please preview your site before committing, and make sure to run 'tools/check' as well. {% endcomment %}

Syllabus & Learning Objectives

Take control with the Bash Shell (Command Line/Shell/Unix)

  • Work in vs. work below the GUI
  • Navigate the shell
  • Find, create, copy, move and delete folders and files
  • Shell over GUI: Command history and tab completion
  • Connect commands into workflows: pipes and redirection
  • Automate repetitive tasks: loops
  • Save and run workflows in scripts
Resources:

Collaborate with git/GitHub

  • Access a repository and pull files
  • Create a repository
  • Record changes: add, commit, ...
  • View changes: status, diff, ...
  • Ignore files
  • Work on the web: clone, pull, push, ...
  • Resolve conflicts
Resources:

Analyse scientific data with Python

  • Use libraries
  • Work with arrays
  • Read and plot data
  • Create and use functions
  • Use loops and conditionals
  • Use Python from the command line
  • Defensive programming
Resources:

Syllabus subject to change if necessary.

{% comment %} SETUP

Delete irrelevant sections from the setup instructions. Each section is inside a 'div' without any classes to make the beginning and end easier to find.

This is the other place where people frequently make mistakes, so please preview your site before committing, and make sure to run 'tools/check' as well. {% endcomment %}

Setup

To participate in the {% if site.carpentry == "swc" %} Software Carpentry {% elsif site.carpentry == "dc" %} Data Carpentry {% elsif site.carpentry == "lc" %} Library Carpentry {% endif %} workshop, you will need access to the software described below. In addition, you will need an up-to-date web browser.

We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.

{% if site.carpentry == "swc" %} {% include swc/setup.html %} {% elsif site.carpentry == "dc" %} {% include dc/setup.html %} {% elsif site.carpentry == "lc" %} {% include lc/setup.html %} {% endif %}