Small fixes

UCL-ARC · Oct 18, 2024 · a5bc7e6 · a5bc7e6
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diff --git a/_quarto.yml b/_quarto.yml
@@ -41,7 +41,7 @@ website:
 
 format:
   html:
-    theme: morph
+    theme: default
     css: styles.css
     toc: false
     smooth-scrolling: true

diff --git a/index.qmd b/index.qmd
@@ -41,6 +41,7 @@ gallery-images:
 </div>
 </div>
 
+<br>
 
 
 <section id="gallery">

diff --git a/phd_projects/entries/Benning_Hearing.qmd b/phd_projects/entries/Benning_Hearing.qmd
@@ -3,7 +3,7 @@ title: "Improving impaired hearing through sound reconstruction from neural acti
 institution: "UCL"
 department: "Computer Science"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Martin Benning"
 
 ---

diff --git a/phd_projects/entries/Benning_Paralift.qmd b/phd_projects/entries/Benning_Paralift.qmd
@@ -3,7 +3,7 @@ title: "PARALIFT – A PARAllel framework for LIFTed training of neural networks
 institution: "UCL"
 department: "Computer Science"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Martin Benning"
 
 ---

diff --git a/phd_projects/entries/Berloff_Quasigeostrophic.qmd b/phd_projects/entries/Berloff_Quasigeostrophic.qmd
@@ -3,7 +3,7 @@ title: "Developing Quasi-Geostrophic Coupled Ocean–Atmosphere Model"
 institution: "Imperial"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Pavel Berloff"
 
 ---

diff --git a/phd_projects/entries/Beskos_bayesiancalibration.qmd b/phd_projects/entries/Beskos_bayesiancalibration.qmd
@@ -3,7 +3,7 @@ title: "Advanced Computational Methods for Bayesian Calibration of High-Dimensio
 institution: "UCL"
 department: "Statistics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Alexandros Beskos"
 
 ---

diff --git a/phd_projects/entries/BetckeM_inverseproblems.qmd b/phd_projects/entries/BetckeM_inverseproblems.qmd
@@ -3,7 +3,7 @@ title: "All-at-once deep learning methods for nonlinear PDE based inverse proble
 institution: "UCL"
 department: "Computer Science"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Marta Betcke"
 
 ---

diff --git a/phd_projects/entries/Betcke_GPUarchitectures.qmd b/phd_projects/entries/Betcke_GPUarchitectures.qmd
@@ -3,7 +3,7 @@ title: "Fast Multipole Methods on modern architectures"
 institution: "UCL"
 department: "Maths and Advanced Research Computing Centre"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Timo Betcke"
 
 ---

diff --git a/phd_projects/entries/Boulle_Koopman.qmd b/phd_projects/entries/Boulle_Koopman.qmd
@@ -3,7 +3,7 @@ title: "Koopman operator learning of nonlinear PDEs"
 institution: "Imperial"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr.Nicholas Boulle"
 
 ---

diff --git a/phd_projects/entries/Bravi_cancerimmune.qmd b/phd_projects/entries/Bravi_cancerimmune.qmd
@@ -3,7 +3,7 @@ title: "A machine learning-informed computational model of cancer-immune interac
 institution: "Imperial"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr. Barbara Bravi"
 
 ---

diff --git a/phd_projects/entries/Briol_Bayesianinference.qmd b/phd_projects/entries/Briol_Bayesianinference.qmd
@@ -3,7 +3,7 @@ title: "Robust Bayesian Inference at Scale"
 institution: "UCL"
 department: "Statistical Science"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr.Francois-Xavier Briol"
 
 ---

diff --git a/phd_projects/entries/Briol_Montecarlo.qmd b/phd_projects/entries/Briol_Montecarlo.qmd
@@ -3,7 +3,7 @@ title: "Transfer Learning for Monte Carlo"
 institution: "UCL"
 department: "Statistical Science"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr.Francois-Xavier Briol"
 
 ---

diff --git a/phd_projects/entries/Briol_simulation.qmd b/phd_projects/entries/Briol_simulation.qmd
@@ -3,7 +3,7 @@ title: "Simulation-based Inference for Expensive Scientific Simulators"
 institution: "UCL"
 department: "Statistical Science"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr.Francois-Xavier Briol"
 
 ---

diff --git a/phd_projects/entries/Burman_heterogeneouscoupling.qmd b/phd_projects/entries/Burman_heterogeneouscoupling.qmd
@@ -3,7 +3,7 @@ title: "A computational framework for heterogeneous coupling in large scale comp
 institution: "UCL"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Erik Burman"
 
 ---

diff --git a/phd_projects/entries/CotterKalise_Fieldgames.qmd b/phd_projects/entries/CotterKalise_Fieldgames.qmd
@@ -3,7 +3,7 @@ title: "A Unified Solver for Optimal Transport, Schroedinger Bridges, and Variat
 institution: "Imperial"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Colin Cotter and Dr. Dante Kalise"
 
 ---

diff --git a/phd_projects/entries/Cotter_hybridmodelling.qmd b/phd_projects/entries/Cotter_hybridmodelling.qmd
@@ -3,7 +3,7 @@ title: "PDE-driven/data-driven hybrid modelling for data assimilation"
 institution: "Imperial"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Colin Cotter"
 
 ---

diff --git a/phd_projects/entries/Coveney_HemeLB.qmd b/phd_projects/entries/Coveney_HemeLB.qmd
@@ -3,7 +3,7 @@ title: "HemeLB at the exascale and beyond: Implementing and studying whole human
 institution: "UCL"
 department: "Chemistry and Advanced Research Computing"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Peter V. Coveney"
 
 ---

diff --git a/phd_projects/entries/Coveney_dynamicalsystems.qmd b/phd_projects/entries/Coveney_dynamicalsystems.qmd
@@ -3,7 +3,7 @@ title: "Quantifying and eliminating floating point pathologies in the simulation
 institution: "UCL"
 department: "Chemistry and Advanced Research Computing"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Peter V. Coveney"
 
 ---

diff --git a/phd_projects/entries/Cox_kwave.qmd b/phd_projects/entries/Cox_kwave.qmd
@@ -3,7 +3,7 @@ title: "Grid-independent pseudospectral models of broadband acoustic wave propag
 institution: "UCL"
 department: "Medical Physics and Biomedical Engineering"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Ben Cox"
 
 ---

diff --git a/phd_projects/entries/Cox_neuralODE.qmd b/phd_projects/entries/Cox_neuralODE.qmd
@@ -3,7 +3,7 @@ title: "Time Reversal Imaging and Learned Physics with Neural ODEs"
 institution: "UCL"
 department: "Medical Physics and Biomedical Engineering"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Ben Cox"
 
 ---

diff --git a/phd_projects/entries/Deisenroth_dataassimilation.qmd b/phd_projects/entries/Deisenroth_dataassimilation.qmd
@@ -3,7 +3,7 @@ title: "Machine Learning for Low-Cost Data Assimilation"
 institution: "UCL"
 department: "Computer Science"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Marc Deisenroth"
 
 ---

diff --git a/phd_projects/entries/Graham_Automatedbayesian.qmd b/phd_projects/entries/Graham_Automatedbayesian.qmd
@@ -3,7 +3,7 @@ title: "Accelerated multi-level Bayesian calibration of expensive simulations on
 institution: "UCL"
 department: "Advanced Research Computing Centre"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr Matt Graham"
 
 ---

diff --git a/phd_projects/entries/Graham_multilevelbayesian.qmd b/phd_projects/entries/Graham_multilevelbayesian.qmd
@@ -3,7 +3,7 @@ title: "Automated Bayesian inference in stochastic differential equation models"
 institution: "UCL"
 department: "Advanced Research Computing Centre"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr Matt Graham"
 
 ---

diff --git a/phd_projects/entries/Hewett_fractaldomains.qmd b/phd_projects/entries/Hewett_fractaldomains.qmd
@@ -3,7 +3,7 @@ title: "Numerical methods for PDEs in fractal domains"
 institution: "UCL"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof David Hewett"
 
 ---

diff --git a/phd_projects/entries/Jensen_unifiedformlanguage.qmd b/phd_projects/entries/Jensen_unifiedformlanguage.qmd
@@ -3,7 +3,7 @@ title: "A Unified Form Language for PDEs in non-divergence form"
 institution: "UCL"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr Max Jensen"
 
 ---

diff --git a/phd_projects/entries/Karin_tissue.qmd b/phd_projects/entries/Karin_tissue.qmd
@@ -3,7 +3,7 @@ title: "Agent-based simulations of tissue dynamics"
 institution: "Imperial"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr.Omer Karin"
 
 ---

diff --git a/phd_projects/entries/Kovalchuk_healthcare.qmd b/phd_projects/entries/Kovalchuk_healthcare.qmd
@@ -3,7 +3,7 @@ title: "Drift detection in graph streams and its applications in healthcare"
 institution: "UCL"
 department: "Computer Science and Advanced Research Computing Centre"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr. Yevgeniya Kovalchuk"
 
 ---

diff --git a/phd_projects/entries/MisenerHam_DAEinterface.qmd b/phd_projects/entries/MisenerHam_DAEinterface.qmd
@@ -3,7 +3,7 @@ title: "Algorithms and software for differentiable programming at the ML/PDE/DAE
 institution: "Imperial"
 department: "Computing and Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Ruth Misener and Prof David Ham"
 
 ---

diff --git a/phd_projects/entries/Ni_StochasticPDE.qmd b/phd_projects/entries/Ni_StochasticPDE.qmd
@@ -3,7 +3,7 @@ title: "Accelerating parabolic Stochastic PDE solver via a weak adversarial netw
 institution: "UCL"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Hao Ni"
 
 ---
@@ -13,7 +13,7 @@ advisor: "Prof Hao Ni"
 
 
 Stochastic partial differential equations (SPDEs) are power mathematical tools to model random spatiotemporal dynamics, with broader applications ranging from weather forecasting to fluid dynamics.  Machine learning (ML)-based approaches are emerging as it can be used to effectively handle the curse of dimensionality of traditional numerical methods. It can lead to the high-performing SPDE solver with significant computational acceleration. Moreover, the generalization of physics- informed neural networks from PDEs to SPDEs may provide a novel family of neural networks for analysing noisy spatiotemporal data, which can be used to discover the hidden physics law and predict the future data evolution. 
-Most of ML algorithms for learning SPDEs fail into the supervised learning category, where the input and output pairs are “observable data” consisted of driving noise and the corresponding solution trajectories. These data are simulated by high quality numerical solver. One important aspect of improving ML algorithms is to design neural networks to better approximate the SPDE solution map [1 – 3]. Among them, our proposed Deep latent regularity network incorporates Regularity structure, a groundbreaking work on SPDEs by the Fields medallist Martin Hairer, to design neural networks. This model demonstrates superior performance in terms of accuracy and inferences time on various SPDEs such as the stochastic 2D Navier-Stokes equation. 
+Most of ML algorithms for learning SPDEs fall into the supervised learning category, where the input and output pairs are “observable data” consisted of driving noise and the corresponding solution trajectories. These data are simulated by high quality numerical solver. One important aspect of improving ML algorithms is to design neural networks to better approximate the SPDE solution map [1 – 3]. Among them, our proposed Deep latent regularity network incorporates Regularity structure, a groundbreaking work on SPDEs by the Fields medallist Martin Hairer, to design neural networks. This model demonstrates superior performance in terms of accuracy and inferences time on various SPDEs such as the stochastic 2D Navier-Stokes equation. 
 
 
 ### Main objectives of the project
@@ -40,7 +40,8 @@ Reference
 
 [3].	Gong, S., Hu, P., Meng, Q., Wang, Y., Zhu, R., Chen, B., Ma, Z., Ni, H. and Liu, T.Y., 2023, June. Deep latent regularity network for modeling stochastic partial differential equations. In Proceedings of the AAAI Conference on Artificial Intelligence (Vol. 37, No. 6, pp. 7740-7747).
 
-[4].	[1] Zang, Y., Bao, G., Ye, X. and Zhou, H., 2020. Weak adversarial networks for high-dimensional partial differential equations. Journal of Computational Physics, 411, p.109409.
+[4].	Zang, Y., Bao, G., Ye, X. and Zhou, H., 2020. Weak adversarial networks for high-dimensional partial differential equations. Journal of Computational Physics, 411, p.109409.
+
+[5].	Oliva, P.V., Wu, Y., He, C. and Ni, H., 2022. Towards fast weak adversarial training to solve high dimensional parabolic partial differential equations using XNODE-WAN. Journal of Computational Physics, 463, p.111233.
 
-[5].	[2] Oliva, P.V., Wu, Y., He, C. and Ni, H., 2022. Towards fast weak adversarial training to solve high dimensional parabolic partial differential equations using XNODE-WAN. Journal of Computational Physics, 463, p.111233.
 [6].	Chevyrev, Ilya, Andris Gerasimovics, and Hendrik Weber. "Feature engineering with regularity structures." arXiv preprint arXiv:2108.05879 (2021).
diff --git a/phd_projects/entries/Parpas_moleculardynamics.qmd b/phd_projects/entries/Parpas_moleculardynamics.qmd
@@ -3,7 +3,7 @@ title: "Efficient Computation of Transition States in Molecular Dynamics"
 institution: "Imperial"
 department: "Computing"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr. Panos Parpas"
 
 ---

diff --git a/phd_projects/entries/Pavliotis_inference.qmd b/phd_projects/entries/Pavliotis_inference.qmd
@@ -3,7 +3,7 @@ title: "Inference and inverse problems for stochastic interacting particle syste
 institution: "Imperial"
 department: "Mathemetics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Greg A. Pavliotis"
 
 ---

diff --git a/phd_projects/entries/Pearce_bacterialbiofilms.qmd b/phd_projects/entries/Pearce_bacterialbiofilms.qmd
@@ -3,7 +3,7 @@ title: "Data-driven multi-scale modelling of bacterial biofilms"
 institution: "UCL"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr. Philip Pearce"
 
 ---

diff --git a/phd_projects/entries/Salvi_Gillespie.qmd b/phd_projects/entries/Salvi_Gillespie.qmd
@@ -3,7 +3,7 @@ title: "A differentiable Gillespie algorithm for exact gradients through discret
 institution: "Imperial"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr.Cristopher Salvi"
 
 ---

diff --git a/phd_projects/entries/Tennyson_TROVE.qmd b/phd_projects/entries/Tennyson_TROVE.qmd
@@ -3,7 +3,7 @@ title: "Re-griding the TROVE nuclear motion program"
 institution: "UCL"
 department: "Physics and Astronomy"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Jonathan Tennyson"
 
 ---

diff --git a/phd_projects/entries/ThomasShahrezaei_inference.qmd b/phd_projects/entries/ThomasShahrezaei_inference.qmd
@@ -3,7 +3,7 @@ title: "Inference of gene regulatory networks from single cell data"
 institution: "Imperial"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Prof Vahid Shahrezaei and Dr. Philipp Thomas "
 
 ---

diff --git a/phd_projects/entries/Tobar_machinelearning.qmd b/phd_projects/entries/Tobar_machinelearning.qmd
@@ -3,7 +3,7 @@ title: "Optimal transport for probabilistic machine learning"
 institution: "Imperial"
 department: "Mathematics"
 author: "Laura Beer"
-date: "02/10/2024"
+date: "10/02/2024"
 advisor: "Dr.Felipe Tobar"
 
 ---

diff --git a/phd_projects/entries/burman_inverse.qmd b/phd_projects/entries/burman_inverse.qmd
@@ -3,7 +3,7 @@ title: "Computational solution of inverse problems using large datasets of low r
 institution: "UCL"
 department: "Mathematics"
 author: "Timo Betcke"
-date: "30/09/2024"
+date: "09/30/2024"
 advisor: "Prof Erik Burman"
 
 ---

diff --git a/phd_projects/entries/cotter_parallel_time.qmd b/phd_projects/entries/cotter_parallel_time.qmd
@@ -3,7 +3,7 @@ title: "Data-driven preconditioning for parallel-in-time PDE solvers"
 institution: "Imperial"
 department: "Mathematics"
 author: "Laura Beer"
-date: "11/10/2024"
+date: "10/11/2024"
 advisor: "Prof Colin Cotter"
 
 ---

diff --git a/phd_projects/entries/gelat.qmd b/phd_projects/entries/gelat.qmd
@@ -3,7 +3,7 @@ title: "Large-scale high-performance solver for therapeutic ultrasound applicati
 institution: "UCL"
 department: "UCL Division of Surgery and Interventional Science"
 author: "Timo Betcke"
-date: "11/10/2024"
+date: "10/11/2024"
 advisor: "Dr Pierre Gélat"
 
 ---