JAGURS-V0516_install

#!/usr/bin/env bash

###############################################
# Installing JAGURS V0516 using GNU 10.2.0
#
# by Brian Alston, June 2023
#

VERSION=${VERSION:-V0516}
COMPILER_TAG=${COMPILER_TAG:-gnu-10.2.0}
INSTALL_PREFIX=${INSTALL_PREFIX:-/shared/ucl/apps/JAGUURS/${VERSION}/${COMPILER_TAG}_MPI}
MD5=${MD5:-d0e0454d87fb9cb08c1897ec34f45ea0}
SRC_ARCHIVE=${SRC_ARCHIVE:-https://github.com/jagurs-admin/jagurs/archive/refs/tags/JAGURS-D_${VERSION}.tar.gz}

export PATH=$INSTALL_PREFIX/bin:$PATH

dirname=$(dirname $0 2>/dev/null || pwd)
INCLUDES_DIR=${INCLUDES_DIR:-${dirname}/includes}
source ${INCLUDES_DIR}/module_maker_inc.sh
source ${INCLUDES_DIR}/require_inc.sh

cluster=$WHEREAMI

require beta-modules
require gcc-libs/10.2.0
require compilers/gnu/10.2.0

if [ "$cluster" == "myriad" ]
then
    require numactl/2.0.12
    require binutils/2.36.1/gnu-10.2.0
    require ucx/1.9.0/gnu-10.2.0
fi

require mpi/openmpi/4.0.5/gnu-10.2.0
require sqlite/3.36.0/gnu-10.2.0
require proj.4/4.9.1
require fftw/3.3.9/gnu-10.2.0
require hdf/5-1.10.6/gnu-10.2.0
require netcdf/4.9.2/gnu-10.2.0
require netcdf-fortran/4.6.1/gnu-10.2.0
require szip/2.1

temp_dir=`mktemp -d -p /dev/shm`

cd $temp_dir

wget --no-check-certificate $SRC_ARCHIVE

CHECKSUM=`md5sum JAGURS-D_${VERSION}.tar.gz| awk '{print $1}'`

if [[ "$MD5" == "$CHECKSUM" ]]
then
   tar xvzf JAGURS-D_${VERSION}.tar.gz
   cd jagurs-JAGURS-D_${VERSION}/src

   # choose suitable Makfile, revise for UCL clusters and build.

   rm -f Makefile
   cp Makefile.gfortran Makefile
   sed -i.bak1 '/^PROJ4_DIR/s|$(HOME)/local|/shared/ucl/apps/PROJ.4/4.9.1|' Makefile
   sed -i.bak2 '/^FFTW3_INCLUDE_DIR/s|$(HOME)/local/include|$(FFTWINCLUDE)|' Makefile
   sed -i.bak3 '/^NETCDF/s|$(HOME)/local|/shared/ucl/apps/NetCDF-fortran/4.6.1-gnu-10.2.0|' Makefile
   make

   # no make install taget so doing a bit of guesswork
   
   mkdir -p ${INSTALL_PREFIX}/bin
   cp jagurs ${INSTALL_PREFIX}/bin
   cd ..
   cp -r doc ${INSTALL_PREFIX}
   cp -r input ${INSTALL_PREFIX}

   # Note: the tools need GMT module loaded to run.
   cp -r tools ${INSTALL_PREFIX}
   
else
   echo "***** Hash mismatch,"
   echo "	Expected: $MD5"
   echo "	Got:      $CHECKSUM"
fi