diff --git a/ExonCov/SampleQC.nf b/ExonCov/SampleQC.nf index e93459b..cde757f 100644 --- a/ExonCov/SampleQC.nf +++ b/ExonCov/SampleQC.nf @@ -12,8 +12,8 @@ process SampleQC { path("${analysis_id}.ExonCovQC_check.out") script: - def samples = sample_ids.collect{"$it"}.join(" ") - def panels = indications.collect{"$it"}.join(" ") + def samples = sample_ids.collect{"$it"}.join(" -s ") + def panels = indications.collect{"$it"}.join(" -p ") """ source ${params.exoncov_path}/venv/bin/activate flask --app ${params.exoncov_path}/ExonCov sample_qc \