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Doxygen version 1.8.13 throws warnings #8

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WardF opened this issue Feb 21, 2020 · 3 comments
Open

Doxygen version 1.8.13 throws warnings #8

WardF opened this issue Feb 21, 2020 · 3 comments

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@WardF
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WardF commented Feb 21, 2020

Currently I am working on OSX using doxygen version 1.8.17, and it works well. If I switch to a Ubuntu 19.10 machine with the latest doxygen installed from their apt repo, version 1.8.13, I get markdown-parsing related warnings and errors.

`@lesserwhirls are you testing against doxygen at all, and if so what version? If you aren't, that's ok. It's throwing a lot of warnings that are ancillary at the moment to the conversion task at hand. But if you are, let me know what version you're using and I'll double check against that. Thanks!
@WardF WardF changed the title Doxygen version 1. Doxygen version 1.8.13 throws warnings Feb 21, 2020
@lesserwhirls
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I'm not at the moment, as I have not set up doxygen on my laptop yet (but it's on the list). I actually grabbed 1.8.17 this morning.

@lesserwhirls
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Circling back to this, I'm on Windows with Doxygen 1.8.17, and I get the following errors when I build:

~\dev\unidata\repos\netcdf\NUG [master ≡]> doxygen .\Doxyfile
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_get_att_string_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_att_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_attid_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_attlen_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_attname_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_atttype_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_natts_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_put_att_double_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_put_att_text_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_compound_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_chunking_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_deflate_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_endian_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_fill_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_rename_var_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_chunk_cache_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_get_vara_double_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_unlimdims_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_var_example5 found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_var_chunking_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_varid_example4 found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_dim_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_dim_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_dim_example3 found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_dim_example2 found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_rename_dim_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_fill_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_deflate_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_chunking_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_endian_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_rename_var_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_chunk_cache_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_get_vara_double_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_varid_example4 found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_var_example5 found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_var_chunking_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_unlimdims_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_att_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_attid_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_attname_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_natts_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_atttype_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_attlen_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_get_att_string_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_put_att_text_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_put_att_double_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_grp_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_compound_example found
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/OPeNDAP.dox:242: warning: multiple use of section label 'dap2_reserved_keywords' while adding section, (first occurrence: C:/Users/sarms/dev/unidata/repos/netcdf/NUG/DAP2.dox, line 213)
C:/Users/sarms/dev/unidata/repos/netcdf/NUG/OPeNDAP.dox:5: warning: multiple use of page label 'dap2', (other occurrence: C:/Users/sarms/dev/unidata/repos/netcdf/NUG/DAP2.dox, line: 8)

but no markdown errors. The GitHub Actions I'm using in the PR I made for building is running 1.8.18-r0, and it shows:

2020-05-11T22:23:55.5826756Z warning: Tag 'TCL_SUBST' at line 270 of file 'Doxyfile' has become obsolete.
2020-05-11T22:23:55.5827419Z          To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
2020-05-11T22:23:55.6621925Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_get_att_string_example found
2020-05-11T22:23:55.6627411Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_att_example found
2020-05-11T22:23:55.6628039Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_attid_example found
2020-05-11T22:23:55.6628628Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_attlen_example found
2020-05-11T22:23:55.6629230Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_attname_example found
2020-05-11T22:23:55.6629821Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_atttype_example found
2020-05-11T22:23:55.6630403Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_natts_example found
2020-05-11T22:23:55.6637925Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_put_att_double_example found
2020-05-11T22:23:55.6638568Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_put_att_text_example found
2020-05-11T22:23:55.6643083Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_compound_example found
2020-05-11T22:23:55.6675065Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_example found
2020-05-11T22:23:55.6675745Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_chunking_example found
2020-05-11T22:23:55.6676380Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_deflate_example found
2020-05-11T22:23:55.6676985Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_endian_example found
2020-05-11T22:23:55.6681943Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_fill_example found
2020-05-11T22:23:55.6682532Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_rename_var_example found
2020-05-11T22:23:55.6683164Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_chunk_cache_example found
2020-05-11T22:23:55.6699915Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_get_vara_double_example found
2020-05-11T22:23:55.6723137Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_unlimdims_example found
2020-05-11T22:23:55.6723481Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_var_example5 found
2020-05-11T22:23:55.6729584Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_var_chunking_example found
2020-05-11T22:23:55.6729919Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_varid_example4 found
2020-05-11T22:23:55.6819647Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_dim_example found
2020-05-11T22:23:55.6820004Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_dim_example found
2020-05-11T22:23:55.6820331Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_dim_example3 found
2020-05-11T22:23:55.6824874Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_dim_example2 found
2020-05-11T22:23:55.6825180Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_rename_dim_example found
2020-05-11T22:23:55.6825484Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_example found
2020-05-11T22:23:55.6825811Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_fill_example found
2020-05-11T22:23:55.6826125Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_deflate_example found
2020-05-11T22:23:55.6826440Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_chunking_example found
2020-05-11T22:23:55.6826737Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_endian_example found
2020-05-11T22:23:55.6827192Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_rename_var_example found
2020-05-11T22:23:55.6827509Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_var_chunk_cache_example found
2020-05-11T22:23:55.6827825Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_get_vara_double_example found
2020-05-11T22:23:55.6840716Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_varid_example4 found
2020-05-11T22:23:55.6844638Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_var_example5 found
2020-05-11T22:23:55.6844949Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_var_chunking_example found
2020-05-11T22:23:55.6845264Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_unlimdims_example found
2020-05-11T22:23:55.6865641Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_att_example found
2020-05-11T22:23:55.6866003Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_attid_example found
2020-05-11T22:23:55.6866317Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_attname_example found
2020-05-11T22:23:55.6866613Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_natts_example found
2020-05-11T22:23:55.6870934Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_atttype_example found
2020-05-11T22:23:55.6871263Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_inq_attlen_example found
2020-05-11T22:23:55.6871586Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_get_att_string_example found
2020-05-11T22:23:55.6871899Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_put_att_text_example found
2020-05-11T22:23:55.6872342Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_put_att_double_example found
2020-05-11T22:23:55.6875049Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_grp_example found
2020-05-11T22:23:55.6877682Z /github/workspace/NUG/netcdf-c.tag:10870: warning: Duplicate anchor nc_def_compound_example found
2020-05-11T22:23:56.0960257Z /github/workspace/NUG/OPeNDAP.dox:242: warning: multiple use of section label 'dap2_reserved_keywords' while adding section, (first occurrence: /github/workspace/NUG/DAP2.dox, line 213)
2020-05-11T22:23:56.4062878Z /github/workspace/NUG/OPeNDAP.dox:5: warning: multiple use of page label 'dap2', (other occurrence: /github/workspace/NUG/DAP2.dox, line: 8)

I guess the interesting thing showing up on the GitHub Action warnings would be the first line: Tag 'TCL_SUBST' at line 270 of file 'Doxyfile' has become obsolete.

@WardF
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WardF commented May 12, 2020

The duplicate anchors aren't vital at this point, but the TCL_SUBST is fixable. Thanks!

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