diff --git a/phables/workflow/scripts/phables_utils/long_utils.py b/phables/workflow/scripts/phables_utils/long_utils.py index 10920dc..27ab757 100644 --- a/phables/workflow/scripts/phables_utils/long_utils.py +++ b/phables/workflow/scripts/phables_utils/long_utils.py @@ -1405,23 +1405,23 @@ def resolve_long( write_path(final_genomic_paths, output) write_path_fasta(final_genomic_paths, f"{output}/resolved_phages") - return ( - resolved_edges, - all_resolved_paths, - all_components, - cycle_components, - linear_components, - resolved_components, - resolved_linear, - single_unitigs, - resolved_cyclic, - case1_found, - case1_resolved, - case2_found, - case2_resolved, - case3_found, - case3_resolved, - phage_like_edges, - all_phage_like_edges, - unresolved_phage_like_edges, - ) + return ( + resolved_edges, + all_resolved_paths, + all_components, + cycle_components, + linear_components, + resolved_components, + resolved_linear, + single_unitigs, + resolved_cyclic, + case1_found, + case1_resolved, + case2_found, + case2_resolved, + case3_found, + case3_resolved, + phage_like_edges, + all_phage_like_edges, + unresolved_phage_like_edges, + ) diff --git a/phables/workflow/scripts/phables_utils/short_utils.py b/phables/workflow/scripts/phables_utils/short_utils.py index 9f12d58..0062657 100644 --- a/phables/workflow/scripts/phables_utils/short_utils.py +++ b/phables/workflow/scripts/phables_utils/short_utils.py @@ -1355,23 +1355,23 @@ def resolve_short( write_path(final_genomic_paths, output) write_path_fasta(final_genomic_paths, f"{output}/resolved_phages") - return ( - resolved_edges, - all_resolved_paths, - all_components, - cycle_components, - linear_components, - resolved_components, - resolved_linear, - single_unitigs, - resolved_cyclic, - case1_found, - case1_resolved, - case2_found, - case2_resolved, - case3_found, - case3_resolved, - phage_like_edges, - all_phage_like_edges, - unresolved_phage_like_edges, - ) + return ( + resolved_edges, + all_resolved_paths, + all_components, + cycle_components, + linear_components, + resolved_components, + resolved_linear, + single_unitigs, + resolved_cyclic, + case1_found, + case1_resolved, + case2_found, + case2_resolved, + case3_found, + case3_resolved, + phage_like_edges, + all_phage_like_edges, + unresolved_phage_like_edges, + )