phables 1.0.0

• This is the first stable release of Phables.
• Replace coverm with minimap2 and awk to calculate contig coverage.
• Add more information about the components from which genomes are resolved.
• Fix code to identify terminal repeats.
• Minor bug fixes and code refactoring.

Full Changelog: v0.2.0...v1.0.0

Please report any issues and suggestions under Phables Issues.

phables 0.2.0

• Updated scan for PHROGs in components.
• Minor bug fixes and code refactoring.
• Please report any issues and suggestions under Phables Issues.

phables 0.1.1

• Combine preprocessing and run steps to one command.
• This release may still contain bugs and unhandled errors.
• Please report any issues and suggestions under Phables Issues.

phables 0.1.0

• Support for any assembly graph in GFA format
• Handling of temporary files for CoverM
• This release may still contain bugs and unhandled errors.
• Please report any issues and suggestions under Phables Issues.

phables 0.1.0b7

• This is the first beta release of Phables.
• Used Snaketool to combine the preprocessing steps and main code into an easy-to-use pipeline.
• This release may still contain bugs and unhandled errors.
• Please report any issues and suggestions under Phables Issues.

phables 0.1.0a3

• This alpha release includes bug fixes of Phables.
• This release may still contain bugs and unhandled errors.
• Please report any issues and suggestions under Phables Issues.

phables 0.1.0a2

• This is the second alpha release of Phables.
• networkx version pinned to 2.8.6 or above as bfs_layers was introduced from version 2.8.6.
• This release may contain bugs and unhandled errors.
• Please report any issues and suggestions under Phables Issues.

phables 0.1.0a1

• This is the first alpha release of Phables.
• This release may contain bugs and unhandled errors.
• Please report any issues and suggestions under Phables Issues.