Software used during the course
| Software | Version (if not latest) | Module | Notes |
|---|---|---|---|
| IGV: Interactive Genome Viewer | - | - | browser-based tool |
| Galaxy | - | - | browser-based tool |
| Inkscape | 0.92.4 | - | |
| MEGA | 11.0.3 | Construction of Phylogenetic Tree | |
| SplitsTree | 4.18.3 | Construction of Phylogenetic Tree | |
| BLAST+ | 2.15.0 | Linux command line & BLAST intro | |
| SPAdes: Genome Assembler | 3.15.4 | Genome Assembly | |
| QUAST | 5.2.0 | Genome Assembly | |
| FastQC | 0.12.1 | Genome Assembly |
For installation and setup, please refer to the following guides:
- Oracle VM VirtualBox Installation Guide – Detailed instructions for installing and configuring VirtualBox on different operating systems. (Note: Separate installations are needed for Intel-based and ARM-based Macs, and the VDI files will differ.)
The Host Operating System Requirements are:
- RAM requirement: 8GB (preferably 12GB)
- Processor requirement: 4 processors (preferably 8)
- Hard disk space: 200GB
- Admin rights to the computer
The course data are free to reuse and adapt with appropriate attribution. All course data in these repositories are licensed under the Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0).
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