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NCBI database not present yet (first time used?)
Downloading taxdump.tar.gz from NCBI FTP site (via HTTP)...
Done. Parsing...
1832000 generating entries...
Uploading to /home/klw17/.etetoolkit/taxa.sqlite
Traceback (most recent call last):
File "NGSweep.py", line 220, in <module>
args.taxon_id)
File "/projects/pathogist/klw17/NGSweep/src/preprocess.py", line 33, in __init__
ncbi = NCBITaxa()
File "/home/klw17/anaconda3/envs/ngsweep/lib/python3.6/site-packages/ete3/ncbi_taxonomy/ncbiquery.py", line 110, in __init__
self.update_taxonomy_database(taxdump_file)
File "/home/klw17/anaconda3/envs/ngsweep/lib/python3.6/site-packages/ete3/ncbi_taxonomy/ncbiquery.py", line 129, in update_taxonomy_database
update_db(self.dbfile)
File "/home/klw17/anaconda3/envs/ngsweep/lib/python3.6/site-packages/ete3/ncbi_taxonomy/ncbiquery.py", line 760, in update_db
upload_data(dbfile)
File "/home/klw17/anaconda3/envs/ngsweep/lib/python3.6/site-packages/ete3/ncbi_taxonomy/ncbiquery.py", line 791, in upload_data
db.execute(cmd)
sqlite3.OperationalError: database is locked
The text was updated successfully, but these errors were encountered:
The text was updated successfully, but these errors were encountered: