AAL-example.json

# there is a defined dimension order it is : xyzT

{  # required
   "name" : "AAL2",

   # optional
   "license" : "MIT",
   "citation" : "doi:10.1016/j.neuroimage.2015.07.075;doi:10.1006/nimg.2001.0978", # DOI recommended
   "version" : "2",
   "contact" : "mailto:aal2.gin.brainatlas@gmail.com",
   "ontology" : "doi:10.10.10.1/localhost",
   "comment" : "all the extra text that doesn't belong anywhere else. ie: please cite the first DOI for the first 20 labels and the second for these other labels...  You can download the atlas from http://www.google.com.fr  Please contact aal2.gin.brainatlas@gmail.com for more information",
   "coordinate_system" : "MNI_152",  # THIS MUST BE REALLY WELL SPECIFIED IN THE SPECIFICATION

   # simple case
   "resource" : "file://bob.nii"

   # complex case
   "resource" : [
      { "id" : "wm",
         "file" : "file://ROI_MNI_V5.nii",
      },

      { "id" : "gm",
            "file" : "file://ROI_MNI_GM_4D.nii,1",
         }

      { "id" : "background",
               "file" : "file://ROI_MNI_bg.nii",
            }
   ]


   "structure" : [
      { "id" : "FAL",
        	"display_name":"Precentral_L",
        	"index":2
  	   },

      [...]

	   { "id" : "VER10",
        "display_name":"Vermis_10",

         # optional
         "index":3,
         "resource" : "wm"
  	   }
   ]

   # readers should create a list of tags that map directly to labels when reading?
   # such that access by name is a search of tag names only.
   "tags" : [
      {  "id" : "temprl_lbe",
         "members" : [
            "T1L",
            "T1R",
            "T1AL",
            "T1AR",
            "T2L",
            "T2R",
            "T2AL",
            "T2AR",
            "T3L",
            "T3R"
         ]

         # optional
         "name" : "Temporal Lobe",
         "example_coordinate" : [10,10,12],
         "colour" : "#ff3342",
      },

      {  "id" : "rgth_brn",
         "name" : "Right brain",
         "members" : [
            "FAR",
            "F1_2R",
            [...]
            "CER9R",
            "CER10R"
         ]
       },

       { "id" : "left_brn",
         "name" : "Left brain",
         "members" : [
            "FAL",
            "CER9L",
            "CER10L"
         ]
       },

       { "id" : "occptl_lbe",
         "name" : "Occipital lobe",
         "members" : [
             	"O1L",
             	"O1R",
             	"O2L",
             	"O2R",
             	"O3L",
             	"O3R"
          	]
       	},
       	"hippocampus" : {
          	"name" : "Hippocampus",
          	"labels" : [
             	"HIPPOL",
             	"HIPPOR"
          	],
        },


   ]



}