mouse-development-4d-example.json

[{
"@type": "header",
   "species": "mouse",
   "organ": "brain",
   "name" : "mouseDevelopmentalAtlas",

   "license" : "CC",
   "citation" : "doi:10.1016/j.neuroimage.2015.07.075",
   "version" : "1",
   "contact" : "mailto:jason.lerch@gmail.com",
   "comment" : "this is a mouse developmental atlas",
   "coordinate_system" : "self defined"
},

{
"@id": "p1-7",
"@type": "datasource",
"mimeType": "application/x-minc",
"source": "file:///P1-7.mnc"
},

{
"@id": "hippocampus_l_p1",
"@type": "structure",
"sourceSelector" : {"dataKey" : "12",
                  "frameDimension" : "3",
                  "frameIndex" : "0",
                  "datasource" : "p1-7"},
"annotation" : {
        "name": "left hippocampus p1",
        "shortName": "lHipP1",
        "seeAlso" : "hippocampus"
        },
"renderOptions":{
   "color": "rgba(12,13,14,128)",
   "shininess": 0.5
  }
},

{
"@id": "hippocampus_l_p3",
"@type": "structure",
"sourceSelector" : {"dataKey" : "12",
                  "frameDimension" : "3",
                  "frameIndex" : "1",
                  "datasource" : "p1-7"},
"annotation" : {
        "name": "left hippocampus p3",
        "shortName": "lHipP3",
        "seeAlso" : "hippocampus"
        },
"renderOptions":{
   "color": "rgba(12,14,14,128)",
   "shininess": 0.5
  }
},

{
"@id": "hippocampus_l_p5",
"@type": "structure",
"sourceSelector" : {"dataKey" : "12",
                  "frameDimension" : "3",
                  "frameIndex" : "2",
                  "datasource" : "p1-7"},
"annotation" : {
        "name": "left hippocampus p5",
        "shortName": "lHipP5",
        "seeAlso" : "hippocampus"
        },
"renderOptions":{
   "color": "rgba(12,15,14,128)",
   "shininess": 0.5
  }
},

{
"@id": "hippocampus_l_p7",
"@type": "structure",
"sourceSelector" : {"dataKey" : "12",
                  "frameDimension" : "3",
                  "frameIndex" : "3",
                  "datasource" : "p1-7"},
"annotation" : {
        "name": "left hippocampus p7",
        "shortName": "lHipP7",
        "seeAlso" : "hippocampus"
        },
"renderOptions":{
   "color": "rgba(12,16,14,128)",
   "shininess": 0.5
  }
},


{
"@id" : "hippocampus",
"type" : "tag",
"annotation" : {
        "name": "hippocampus",
        "description": "it remembers stuff, don't cut it out.",
        "shortName": "Hip",
        "ontologyReferences": ["http://paxinos+watson.org/"]
        },
"members":["hippocampus_l_p1", "hippocampus_l_p3", "hippocampus_l_p5", "hippocampus_l_p7"],
"renderOptions": "blue"
}
]