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environment_20210406.yml
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environment_20210406.yml
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name: cfDNApipe
channels:
- dranew
- anaconda
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_llvm
- _r-mutex=1.0.1=anacondar_1
- adapterremoval=2.3.1=hb7ba0dd_1
- bcftools=1.9=h68d8f2e_9
- bedtools=2.29.2=hc088bd4_0
- binutils_impl_linux-64=2.33.1=he1b5a44_7
- binutils_linux-64=2.33.1=h9595d00_17
- bioconductor-dnacopy=1.60.0=r36h6e990d7_0
- biopython=1.76=py36h516909a_0
- bismark=0.23.0=0
- blas=2.17=openblas
- blast=2.9.0=pl526h3066fca_4
- bowtie2=2.4.2=py36h5202f60_1
- bwidget=1.9.14=ha770c72_0
- bx-python=0.8.9=py36h5e0341f_2
- bzip2=1.0.8=h7f98852_4
- ca-certificates=2020.12.8=h06a4308_0
- cairo=1.14.12=h8948797_3
- centrifuge=1.0.4_beta=py36pl526he941832_2
- certifi=2020.12.5=py36h5fab9bb_1
- cnvkit=0.9.6=py36_1
- curl=7.68.0=hf8cf82a_0
- cycler=0.10.0=py36_0
- dbus=1.13.18=hb2f20db_0
- decorator=4.4.2=py_0
- entrez-direct=13.9=pl526h375a9b1_0
- expat=2.2.10=he6710b0_2
- fastqc=0.11.9=0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- fontconfig=2.13.0=h9420a91_0
- freetype=2.10.4=h5ab3b9f_0
- fribidi=1.0.10=h36c2ea0_0
- future=0.18.2=py36h5fab9bb_2
- gatk4=4.1.9.0=py39_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_17
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_17
- glib=2.56.2=hd408876_0
- graphite2=1.3.13=h58526e2_1001
- gsl=2.5=h294904e_1
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_17
- harfbuzz=1.9.0=he243708_1001
- hisat2=2.2.1=he1b5a44_2
- hmmcopy_utils=0.0.1=1
- htslib=1.9=h244ad75_9
- icu=58.2=he6710b0_3
- joblib=0.17.0=py_0
- jpeg=9b=habf39ab_1
- kiwisolver=1.2.0=py36hfd86e86_0
- krb5=1.16.4=h2fd8d38_0
- lcms2=2.11=h396b838_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libblas=3.8.0=17_openblas
- libcblas=3.8.0=17_openblas
- libcurl=7.68.0=hda55be3_0
- libdeflate=1.3=h516909a_0
- libedit=3.1.20191231=h14c3975_1
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=9.3.0=h5dbcf3e_17
- libgfortran-ng=7.3.0=hdf63c60_0
- liblapack=3.8.0=17_openblas
- liblapacke=3.8.0=17_openblas
- libopenblas=0.3.10=h5a2b251_0
- libpng=1.6.37=hbc83047_0
- libssh2=1.9.0=hab1572f_5
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.1.0=h2733197_1
- libuuid=1.0.3=h1bed415_2
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.10=hb55368b_3
- llvm-openmp=11.0.0=hfc4b9b4_1
- lz4-c=1.9.2=heb0550a_3
- lzo=2.10=h516909a_1000
- make=4.3=hd18ef5c_1
- matplotlib=3.3.1=0
- matplotlib-base=3.3.1=py36h817c723_0
- ncurses=6.2=he6710b0_1
- networkx=2.5=py_0
- nomkl=1.0=h5ca1d4c_0
- numpy=1.19.1=py36h30dfecb_0
- numpy-base=1.19.1=py36h75fe3a5_0
- olefile=0.46=py36_0
- openjdk=8.0.265=h516909a_0
- openssl=1.1.1i=h7f98852_0
- pandas=1.1.3=py36he6710b0_0
- pango=1.42.4=h049681c_0
- patsy=0.5.1=py36_0
- pcre=8.44=he6710b0_0
- perl=5.26.2=h36c2ea0_1008
- perl-app-cpanminus=1.7044=pl526_1
- perl-archive-tar=2.32=pl526_0
- perl-base=2.23=pl526_1
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-carp=1.38=pl526_3
- perl-common-sense=3.74=pl526_2
- perl-compress-raw-bzip2=2.087=pl526he1b5a44_0
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-constant=1.33=pl526_1
- perl-data-dumper=2.173=pl526_0
- perl-digest-hmac=1.03=pl526_3
- perl-digest-md5=2.55=pl526_0
- perl-encode=2.88=pl526_1
- perl-encode-locale=1.05=pl526_6
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker=7.36=pl526_1
- perl-file-listing=6.04=pl526_1
- perl-file-path=2.16=pl526_0
- perl-file-temp=0.2304=pl526_2
- perl-html-parser=3.72=pl526h6bb024c_5
- perl-html-tagset=3.20=pl526_3
- perl-html-tree=5.07=pl526_1
- perl-http-cookies=6.04=pl526_0
- perl-http-daemon=6.01=pl526_1
- perl-http-date=6.02=pl526_3
- perl-http-message=6.18=pl526_0
- perl-http-negotiate=6.01=pl526_3
- perl-io-compress=2.087=pl526he1b5a44_0
- perl-io-html=1.001=pl526_2
- perl-io-socket-ssl=2.066=pl526_0
- perl-io-zlib=1.10=pl526_2
- perl-json=4.02=pl526_0
- perl-json-xs=2.34=pl526h6bb024c_3
- perl-libwww-perl=6.39=pl526_0
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-lwp-mediatypes=6.04=pl526_0
- perl-lwp-protocol-https=6.07=pl526_4
- perl-mime-base64=3.15=pl526_1
- perl-mozilla-ca=20180117=pl526_1
- perl-net-http=6.19=pl526_0
- perl-net-ssleay=1.88=pl526h90d6eec_0
- perl-ntlm=1.09=pl526_4
- perl-parent=0.236=pl526_1
- perl-pathtools=3.75=pl526h14c3975_1
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-socket=2.027=pl526_1
- perl-storable=3.15=pl526h14c3975_0
- perl-test-requiresinternet=0.05=pl526_0
- perl-time-local=1.28=pl526_1
- perl-try-tiny=0.30=pl526_1
- perl-types-serialiser=1.0=pl526_2
- perl-uri=1.76=pl526_0
- perl-www-robotrules=6.02=pl526_3
- perl-xml-namespacesupport=1.12=pl526_0
- perl-xml-parser=2.44=pl526h4e0c4b3_7
- perl-xml-sax=1.02=pl526_0
- perl-xml-sax-base=1.09=pl526_0
- perl-xml-sax-expat=0.51=pl526_3
- perl-xml-simple=2.25=pl526_1
- perl-xsloader=0.24=pl526_0
- pillow=8.0.0=py36h9a89aac_0
- pip=20.3.3=py36h06a4308_0
- pixman=0.40.0=h36c2ea0_0
- pomegranate=0.13.3=py36hdb11119_0
- pybedtools=0.8.1=py36h5202f60_2
- pyfaidx=0.5.9.2=pyh3252c3a_0
- pyparsing=2.4.7=py_0
- pyqt=5.9.2=py36h22d08a2_1
- pysam=0.15.3=py36hbcae180_3
- python=3.6.10=h191fe78_1
- python-box=5.2.0=pyhd8ed1ab_0
- python-dateutil=2.8.1=py_0
- python-lzo=1.12=py36h864e7bf_1001
- python_abi=3.6=1_cp36m
- pytz=2020.1=py_0
- pyyaml=5.3.1=py36he6145b8_1
- qt=5.9.7=h5867ecd_1
- qualimap=2.2.2a=1
- r-base=3.6.0=hce969dd_0
- r-cghflasso=0.2_1=r36h6e990d7_1004
- readline=7.0=hf8c457e_1001
- reportlab=3.5.59=py36h3e18861_0
- ruamel.yaml=0.16.12=py36h7b6447c_1
- ruamel.yaml.clib=0.2.2=py36h7b6447c_0
- samtools=1.6=h244ad75_5
- scikit-learn=0.23.2=py36h0573a6f_0
- scipy=1.5.2=py36habc2bb6_0
- seaborn=0.11.0=py_0
- setuptools=51.0.0=py36h06a4308_2
- sip=4.19.24=py36he6710b0_0
- six=1.15.0=py_0
- sqlite=3.33.0=h62c20be_0
- statsmodels=0.12.0=py36h7b6447c_0
- tbb=2020.2=hc9558a2_0
- threadpoolctl=2.1.0=pyh5ca1d4c_0
- tk=8.6.10=hbc83047_0
- tktable=2.10=hb7b940f_3
- toml=0.10.1=py_0
- tornado=6.0.4=py36h7b6447c_1
- tqdm=4.50.2=py_0
- wheel=0.36.2=pyhd3eb1b0_0
- xz=5.2.5=h7b6447c_0
- yaml=0.2.5=h516909a_0
- yattag=1.13.2=py_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.4=h0b5b093_3
- pip:
- cfdnapipe