error while loading shared libraries: libgsl.so.25

[Qingru44004]

Hi,

I used conda to install rmats. But when I run statistic part it shows me error:

miniconda3/envs/rmats3.9/rMATS/rMATS_C/rMATSexe: error while loading shared libraries: libgsl.so.25: cannot open shared object file: No such file or directory
Traceback (most recent call last):
File "miniconda3/envs/rmats3.9/rMATS/rMATS_P/FDR.py", line 53, in
ifile=open(sys.argv[1]);title=ifile.readline();
FileNotFoundError: [Errno 2] No such file or directory: 'rmats_post/tmp/JC_SE/rMATS_result_P-V.txt'
paste: rmats_post/tmp/JC_SE/rMATS_result_FDR.txt: No such file or directory

I tried to install gsl==2.5. But the error shows that rmats requires gsl>=2.7

Could not solve for environment specs
The following packages are incompatible
├─ gsl 2.5 is requested and can be installed;
├─ pin-1 is installable and it requires
│ └─ python 3.9.* , which can be installed;
└─ rmats is not installable because there are no viable options
├─ rmats [4.1.2|4.2.0] would require
│ └─ gsl >=2.7,<2.8.0a0 , which conflicts with any installable versions previously reported;

[EricKutschera]

The rmats bioconda package expects to be installed with conda-forge dependencies and the conda-forge gsl-2.7 uses libgsl.so.25. Using -c conda-forge with conda install usually works, but conda might have a config value that prevents things from working correctly. conda config --show-sources can show the values and channel_priority: disabled could be causing the issue

See these posts:
#281
#300

[Qingru44004]

Thanks! It solved my problem.