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Release 0.0.4

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@drisso drisso released this 08 Jun 23:43
· 310 commits to master since this release

Changes in version 0.0.4

  • Fixed a few bugs and documentation mismatches
  • Removed stability evaluation (redundant with sil width and slow)
  • Removed clusterExperiment dependency
  • Removed RUV correlation score. UV correlation now takes ruv control genes as default
  • Added RLE measures to scone evaluation
  • Added FQT_FN to implement careful ties handling by FQ
  • Better handling of plots in sample filter functions
  • Mean score rather than median rank to evaluate normalizations
  • Default value for imputation
  • Minor optimizations to evaluations