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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(AssoAnalysis)
export(MIC_pvalue)
export(ZSscore)
export(add_row)
export(ann_expr)
export(ann_expr2)
export(enrich_geneset)
export(enrich_gsea)
export(findDEG)
export(graph_node)
export(pathway_gsva)
export(pdataSummary)
export(plotBorutaImpHistory)
export(plotCorHeatmap)
export(plotExprBox)
export(plotExprBox2)
export(plotExprCor)
export(plotExprDIM)
export(plotExprGSEAHeatmap)
export(plotExprGenesetHeatmap)
export(plotExprVolcano)
export(plotForest)
export(plotGroupBar)
export(plotSummaryDEGHeatmap)
export(plotSummaryGSEAHeatmap)
export(prepareGeneset)
export(runTwoSampleMR)
export(runTwoSampleMR2)
export(select_Boruta)
export(select_cox_single)
export(select_lm_single)
export(select_logistic_single)
export(sim_expr)
export(sim_expr2)
import(shinydashboard)
import(visNetwork)
importFrom(Biobase,exprs)
importFrom(Biobase,featureNames)
importFrom(Boruta,Boruta)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,results)
importFrom(DT,renderDataTable)
importFrom(FactoMineR,PCA)
importFrom(GSVA,gsva)
importFrom(Hmisc,rcorr)
importFrom(ROCR,performance)
importFrom(ROCR,prediction)
importFrom(ReactomePA,enrichPathway)
importFrom(ReactomePA,gsePathway)
importFrom(Rtsne,Rtsne)
importFrom(TwoSampleMR,extract_instruments)
importFrom(TwoSampleMR,extract_outcome_data)
importFrom(TwoSampleMR,harmonise_data)
importFrom(TwoSampleMR,mr)
importFrom(TwoSampleMR,mr_method_list)
importFrom(arules,apriori)
importFrom(arules,inspect)
importFrom(clusterProfiler,GSEA)
importFrom(clusterProfiler,bitr)
importFrom(clusterProfiler,enrichGO)
importFrom(clusterProfiler,enrichKEGG)
importFrom(clusterProfiler,enrichMKEGG)
importFrom(clusterProfiler,enricher)
importFrom(clusterProfiler,gseGO)
importFrom(clusterProfiler,gseKEGG)
importFrom(clusterProfiler,gseMKEGG)
importFrom(clusterProfiler,read.gmt)
importFrom(clusterProfiler,setReadable)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(factoextra,fviz_pca_ind)
importFrom(genefilter,findLargest)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_fill)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,stat_ellipse)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,unit)
importFrom(ggpubr,stat_compare_means)
importFrom(ggpubr,stat_cor)
importFrom(ggrepel,geom_text_repel)
importFrom(ggsci,scale_color_jco)
importFrom(ggsci,scale_fill_jco)
importFrom(gtsummary,add_n)
importFrom(gtsummary,add_p)
importFrom(gtsummary,bold_labels)
importFrom(gtsummary,modify_header)
importFrom(gtsummary,tbl_summary)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,betweenness)
importFrom(igraph,closeness)
importFrom(igraph,degree)
importFrom(igraph,evcent)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,strength)
importFrom(immcp,read_gmt)
importFrom(immcp,to_df)
importFrom(immcp,to_list)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,topTable)
importFrom(magrittr,"%>%")
importFrom(methods,as)
importFrom(minerva,mine)
importFrom(pbapply,pblapply)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(scales,muted)
importFrom(shiny,column)
importFrom(shiny,fileInput)
importFrom(shiny,fluidRow)
importFrom(shiny,icon)
importFrom(shiny,numericInput)
importFrom(shiny,radioButtons)
importFrom(shiny,reactive)
importFrom(shiny,req)
importFrom(shiny,shinyApp)
importFrom(shiny,sliderInput)
importFrom(stats,model.matrix)
importFrom(stringr,str_sub)
importFrom(survival,Surv)
importFrom(survival,coxph)
importFrom(tidyr,separate)
importFrom(tidyr,unite)
importFrom(utils,read.csv)
importFrom(visNetwork,renderVisNetwork)
importFrom(visNetwork,visNetworkOutput)
importFrom(vroom,vroom)