scDeepTalk

Infer contact-dependent cell-cell communications with ligand-receptor interactions based on a deep learning model of feed-forward neural network.

data/example_data.RData mouse intestine data for training the model
model/mouse_intestine.rds pre-trained model of mouse intestine
R/scDeeptalk.R R script for run scDeepTalk pipeline

Dependency

R > 3.6
Packages: h2o