Housekeeping

Major code cleanup planned for the next release. Maintenance release.

0.5

pre release changes (#127)

* pre release changes

* building docker images

* changing version in dockerfile

* automatic version_number population to Dockerfile

Revision release

Release 0.4

* highlights

* fixing build.sh

* intro, repositories

* discarding containers building

* Benchmark query

* test change

* Benchmark query fix

* Benchmark query fix

* test msg

* Benchmark query

* rbo improved

* Benchmarking draft

* Benchmarking datasets/software

* Benchmarking test procedure

* interval tree reworked

* Benchmarking updates

* Benchmarking updates

* Fix ADAM datasource column prunning

* sparklyr

* benchmark fixes

* thrift fix

* thrift code cleanup

* standalone thriift fixed

* publishing fixed assembly

* docker thrift fixed

* arch doc for thrift

* coverage method mosdepth added

* Some coverage optimizations

* Some coverage optimizations

* integrations section

* moving yarn to integrations

* ad-hoc analysis-> quickstart

* removed ad-hoc from integrations

* tomek-test

* add codex to use cases - part1

* add codex to use cases - part2

* add codex to use cases - part3

* add codex to use cases - part4

* add codex to use cases - part5

* add codex to use cases - part6

* add codex to use cases - part6

* SeQuiLa_codex workflow

* sequila_connect

* sequila_connect

* sequila_codex fix

* udf refactoring added bdg_ prefix

* Doc refactor udfs

* sequila_codex fix

* Doc refactor udfs

* architecture section updated

* dataset's structure in API section

* new components diagram added

* components for landing page

* Proofing SD

* SD class changed to howto +excluded landing page from ToC

* Some minor changes to data sources

* Some minor changes to data sources

* datasets' structure

* fix pack

* Preparing for 0.4 release - RC1

* SeQuiLa 0.4 RC2

* BDG version not displayed in a monit

* SeQuiLa 0.4 - RC3 BDG version not displayed in a monit

Publication release

Docker_build fix (#75)

* Docker_build fix

* fix dockerfile

First official release

0.2

Chromosome opt (#27)