Parameters.txt

slide_path: images/                     # path to the folder of slide images
xml_path: xml/                          # path to the folder of xml files
output_dir: output/                     # path to the output folder where image_chips, image_masks, and text_files will be saved
format: tif                             # output format of the image_chips and image_masks
quality: 95                             # output quality: JPEG compression if output format is 'jpg' (100 recommended, jpg compression artifacts will distort image segmentation)
size: 256                               # size of image_chips and image_masks
overlap: 0                              # pixel overlap between image chips
key: Annotation_Key.txt                 # the text file containing annotation keys and color codes
save_all: True                          # True saves every image_chip, False only saves chips containing an annotated pixel
save_ratio: inf                         # Ratio of image_chips containing annotations to image_chips not containing annotations (use 'inf' if only annotated chips are desired; only applicable if save_all == False)
print: 1                                # Suppress print output for chips/textfiles (1 = print, 0 = suppress output)
tags: 1                                 # Label images with key tags for sorting (1 = tags, 0 = no tags)
level: all                              # Choose from highest (highest magnification), all, lowest (lowest magnification), 40.0, 20.0, 10.0, 5.0, 2.5, 1.25
                                        # if no specific magnification created by manufactory will use lower magnification. e.g 40x->20x
cpus: 4                                 # Number of CPUs