setup.py

#!/usr/bin/env python

from setuptools import setup


# Modified from http://stackoverflow.com/questions/2058802/
# how-can-i-get-the-version-defined-in-setup-py-setuptools-in-my-package
def version():
    import os
    import re

    init = os.path.join("midtools", "__init__.py")
    with open(init) as fp:
        initData = fp.read()
    match = re.search(r"^__version__ = ['\"]([^'\"]+)['\"]", initData, re.M)
    if match:
        return match.group(1)
    else:
        raise RuntimeError("Unable to find version string in %r." % init)


setup(
    name="midtools",
    version=version(),
    packages=["midtools"],
    url="https://github.com/acorg/midtools",
    download_url="https://github.com/acorg/midtools",
    author="Terry Jones",
    author_email="tcj25@cam.ac.uk",
    keywords=["genetic sequences"],
    classifiers=[
        "Programming Language :: Python :: 2.7",
        "Programming Language :: Python :: 3.5",
        "Programming Language :: Python :: 3.6",
        "Development Status :: 4 - Beta",
        "Intended Audience :: Developers",
        "License :: OSI Approved :: MIT License",
        "Operating System :: OS Independent",
        "Topic :: Software Development :: Libraries :: Python Modules",
    ],
    description=(
        "Command line scripts and Python classes for detecting "
        "multiple infections from NGS reads."
    ),
    long_description="See https://github.com/acorg/midtools for details.",
    license="MIT",
    scripts=[
        "bin/base-frequencies.py",
        "bin/connected-components.py",
        "bin/consistency-basic.py",
        "bin/consistency-heatmap.py",
        "bin/coverage-and-significant-locations.py",
        "bin/create-mid-experiment-data.py",
        "bin/create-reads.py",
        "bin/multiple-significant-base-frequencies.py",
        "bin/mutate-reads.py",
        "bin/random-nt-sequence.py",
        "bin/significant-base-frequencies.py",
        "bin/simulation-significant-base-frequencies.sh",
    ],
    install_requires=[
        "dark-matter>=4.0.6",
        "plotly>=2.7.0",
        "flake8>=3.5.0",
    ],
)