Assembly review, scissor-shaped situational pointer does not show up

[weihongqi]

Dear Colleagues,

I tried to edit a 3D-DNA assembly using JBAT. Both v1.9.8 and v1.11.08 were downloaded to my Macbook Pro and tested. After loading the hic and Final.assembly file, I could select a super scaffold by shift+click. But when the mouse (with an external mouse and trackpad) was moved towards the diaganol of the heatmap, the scissor-shaped situational pointer did not show up. Do you know how to fix this? Many thanks in advance.

Kind regards,

Weihong

[oneillkza]

I am having the same issue. Shift-click also doesn't do what's shown in the tutorial video -- it just opens up a view of the scaffold rather than selecting it. It doesn't seem to be possible to actually select anything, and all of the various assembly tools in the right-click menu (move to debris, add chromosome boundaries, etc) are permanently greyed out.

[oneillkza]

@sa501428 is there example data somewhere to test whether this is working at all?

The .assembly file I'm using was generated from the SALSA .agp file, using a script from Phase Genomics https://github.com/phasegenomics/juicebox_scripts

I don't know if maybe JBAT only works using .assembly files generated by 3DDNA?