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pymix

PyMix - The Python mixture package

Author: Alexander Mendez

Original Author: Benjamin Georgi <georgi@molgen.mpg.de>

Installation Instructions:

  • Required Packages

    Python (version 2.5+ recommended, tested with 2.7)

    Numpy (version 1.6?, tested with 1.6)

    GSL GNU Scientific library

  • Optional Packages

    GHMM for mixtures of HMMs

    pylab for plotting functions in plotMixture.py

  • How to install ?

    Extract the tarball to some directory of your choice. Change into the directory and run:

    python setup.py build python setup.py install --prefix=/some/where

    If you wish to pull down the github version you can use pip:

    pip install git+https://github.com/ajmendez/PyMix.git

    It is now part of pypi:

    pip install pymix

    After the installation is completed I would recommend to run mixtureunittests.py to check whether everything is in order.

    To get the GSL on OSX I recomend using homebrew to build the universal package so that it works with both the i386 version in EPD:

    brew install gsl --universal

Documentation:

Example code for most aspects of the library can be found in the pymix/examples subdirectory and mixtureunittest.py. Automatically generated documentation for the module is available on the Pymix home page www.pymix.org.